Distribution and interrelationship of contig score components. (A) Distribution of contig score components in 10 different assemblies spanning four species and three different assemblers. s(Cnuc) is the fraction of nucleotides in a contig whose sequence identity agrees with the aligned reads. s(Ccov) is the fraction of nucleotides in a contig that have one or more mapped reads. s(Cord) is the fraction of reads that map to the contig in the correct orientation. s(Cseg) is the probability that the read coverage along the length of the contig is best explained by a single Dirichlet distribution, as opposed to two or more distributions. (B) The Spearman's rank correlation coefficient between the contig score components, averaged across all species and assemblers.
