Empirical power and average number of false positives generated by each method in 50 simulated data sets simulated under Scenario 3 but with cases chosen only from one population
Scenario 3: All cases from one population | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHISQ | GC | SLR | BLR | STR2 | AM2 | |||||||
| All SNPs included | ||||||||||||
| Power (%) | 98 | 0 | 86 | 92 | 92 | 98 | ||||||
| Average no. false +ve | 52 | 0 | 6 | 13 | 7 | 29 | ||||||
| Causal SNP excluded | ||||||||||||
| Power (%) | 98 | 0 | 68 | 80 | 78 | 94 | ||||||
| Average no. false +ve | 52 | 0 | 6 | 14 | 7 | 31 | ||||||
| Gene 1 excluded | ||||||||||||
| Average no. false +ve | 52 | 0 | 6 | 15 | 6 | 30 | ||||||