Sequence compositions of HMPR, HC, MF, and UF libraries
HMPR | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Libraries studied | HpaII-1 | HpaII-2 | HpyCH4IV-1 | HpyCH4IV-2 | Total | HC | MF | UF | ||||
| No. of sequencesa | 700 | 736 | 683 | 679 | 2798 | 1000b | 1000b | 1000b | ||||
| Known genes (%) | 16.6 | 26.0 | 23.7 | 26.0 | 23.1 | 23.4 | 33.7 | 3.6 | ||||
| Known retroelements (%) | 3.4 | 7.1 | 4.0 | 2.3 | 4.2 | 17.1 | 20.6 | 72.7 | ||||
| Other repetitive DNA (%) | 4.9 | 4.1 | 2.2 | 4.9 | 4.0 | 4.7 | 1.9 | 5.9 | ||||
| Organellar DNA (%)c | 10.0 | 9.4 | 11.4 | 10.9 | 10.3 | 0.1 | 0.2 | 0.2 | ||||
| Unknown sequences (%) | 65.1 | 53.5 | 58.7 | 55.9 | 58.3 | 54.7 | 43.6 | 17.6 | ||||
a Trimmed sequences with high-quality bases >150
b One thousand sequences randomly sampled from 306,557 HC clones, 281,669 MF clones, and 17,679 UF clones
c Chloroplast and mitochondrial DNA