Table 2.

Missing Call Accuracy for Two Parents

10 Families
160 Families
320 Families
Children
MCAa
BMCAb
MCA
BMCA
MCA
BMCA
All sitesc
    0 0.871 (0.003) 0.773 (0.004) 0.934 (0.001) 0.868 (0.002) 0.971 (0.0009) 0.874 (0.002)
    1 0.944 (0.002) 0.794 (0.003) 0.969 (0.0006) 0.907 (0.002) 0.962 (0.0006) 0.911 (0.001)
    2 0.969 (0.001) 0.893 (0.003) 0.978 (0.0004) 0.939 (0.001) 0.978 (0.0003) 0.942 (0.0009)
    3 0.981 (0.001) 0.934 (0.003) 0.987 (0.0002) 0.963 (0.0007) 0.987 (0.0002) 0.965 (0.0006)
q > 0.10c
    0 0.842 (0.004) 0.649 (0.004) 0.917 (0.002) 0.644 (0.003) 0.912 (0.002) 0.642 (0.003)
    1 0.946 (0.002) 0.746 (0.004) 0.953 (0.001) 0.747 (0.002) 0.952 (0.001) 0.746 (0.002)
    2 0.972 (0.001) 0.841 (0.004) 0.973 (0.0008) 0.839 (0.002) 0.972 (0.0006) 0.837 (0.001)
    3
0.982 (0.001)
0.903 (0.003)
0.984 (0.0004)
0.902 (0.0009)
0.984 (0.0004)
0.900 (0.001)

a Missing call accuracy (SEM).

b Baseline missing call accuracy (SEM).

c Minor allele frequency.