HMMER Search of Eight Eukaryotic Genomes Using HMMs Linked to TRANSFAC
Species | Sizea | Matches | % Genome |
|---|---|---|---|
| P. falciparum | 5273 | 69 | 1.3 |
| S. cerevisiae | 6292 | 249 | 4.0 |
| S. pombe | 4882 | 205 | 4.2 |
| C. elegans | 19,099 | 936 | 4.9 |
| D. melanogaster | 13,707 | 865 | 6.3 |
| A. thaliana | 27,387 | 1807 | 6.6 |
| H. sapiens | 29,303 | 1987 | 6.8 |
| A. gambiae | 15,101 | 1045 | 6.9 |
Columns: Size, no. protein sequence entries for a genome; Matches, no. sequences matching the 51 HMMs; % Genome, percentage of genome matching the HMMs.
a Total no. sequences searched: 121,044