Genomic Environment of Ta-1, L1PA2, and L1PA5 Elements
Ta-1 | ||||||||
|---|---|---|---|---|---|---|---|---|
| Genomic featuresa | Polymorphic | Fixed | Total | L1PA2 | L1PA5 | Genomic average | ||
| % GC (20 kb) | 39.00 | 38.89 | 38.96 | 38.62 | 38.64 | 41.00b | ||
| % SINEs (100 kb) | 9.27 | 8.85 | 9.21 | 8.26 | 9.30 | 13.14b | ||
| % LINEs (100 kb) | 22.35 | 23.20 | 23.12 | 23.59 | 21.97 | 20.42b | ||
| % LTR-retrotransposons (100 kb) | 8.36 | 8.29 | 8.44 | 8.61 | 8.66 | 8.29b | ||
| % Repeats (100 kb) | 42.84 | 43.27 | 43.50 | 43.26 | 42.60 | 44.83b | ||
| Local recombination rate | 1.05 | 1.12 | 1.07 | 1.05 | 1.08 | 1.28c | ||
| Gene density (5 Mb) | 18.83 | 21.16 | 19.49 | 17.74 | 19.02 | 24.45d | ||
a Numbers in parentheses indicate the window size analyzed.
b IHGSC (2001).
c Deduced from Web table E of Kong et al. (2002).
d Calculated from RefSeq genes table at http://genome.ucsc.edu/.