Alignment Algorithms Accessible Through Sockeye
LAGAN | Pairwise alignment algorithm (Brudno et al. 2003). Aligns several megabytes in minutes. |
| Multi-LAGAN | Multiple alignment algorithm (Brudno et al. 2003). Requires as input the phylogenetic tree. |
| ClustalW | Multiple alignment algorithm (Thompson et al. 1994). Infers a phylogenetic tree. |