Threshold of Overrepresentation a for Each Genome and Repeat Type
Mono | di | tri | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a/t | g/c | ac/gt | ag/ct | at/ta | cg/gc | aac/gtt | aag/ctt | aat/att | acc/ggt | acg/cgt | act/agt | agc/gct | agg/cct | atc/gat | ccg/cgg | ||||||||||||||
| H. sap. | 3 | 9 | ≤4 | ≤4 | 8 | 13 | 11 | ≤6 | 10 | ≤6 | 15 | 16 | ≤6 | ≤6 | 9 | 11 | |||||||||||||
| M. mus. | 7 | 10 | ≤4 | ≤4 | 12 | 12 | 13 | 13 | 14 | 11 | 14 | 14 | 12 | 11 | 13 | 12 | |||||||||||||
| F. rub. | 3 | 5 | ≤4 | ≤4 | 10 | 13 | ≤6 | ≤6 | 8 | ≤6 | 14 | 14 | ≤6 | ≤6 | ≤6 | 7 | |||||||||||||
| D. mel. | 3 | 6 | 5 | 9 | 6 | 13 | ≤6 | 8 | 8 | ≤6 | 9 | 14 | ≤6 | ≤6 | 10 | ≤6 | |||||||||||||
| C. ele. | 3 | 10 | 10 | 10 | 15 | 10 | 14 | ≤6 | 16 | ≤6 | 12 | 14 | ≤6 | ≤6 | 13 | ≤6 | |||||||||||||
| A. tha. | 3 | 11 | 7 | ≤4 | 8 | 12 | ≤6 | ≤6 | 16 | ≤6 | 12 | 14 | ≤6 | ≤6 | ≤6 | 7 | |||||||||||||
| Rice 1b | 3 | 10 | 7 | 5 | 6 | 5 | ≤6 | ≤6 | 7 | ≤6 | 7 | 8 | ≤6 | ≤6 | ≤6 | ≤6 | |||||||||||||
| Rice 2c | 3 | 4 | 7 | 5 | 6 | 5 | ≤6 | ≤6 | 7 | ≤6 | 7 | 8 | ≤6 | ≤6 | ≤6 | ≤6 | |||||||||||||
| C. alb. | ≤2 d | ≤2 d | 7 | 9 | 11 | never | ≤6 | ≤6 | 10 | ≤6 | 11 | 9 | ≤6 | ≤6 | ≤6 | 11 | |||||||||||||
| S. cer. | 3 | 11 | 12 | 13 | 13 | 11 | 13 | ≤6 | 16 | ≤6 | 12 | 14 | ≤6 | 13 | ≤6 | 11 | |||||||||||||
a Long microsatellites are overrepresented. We determined at which size a given repeat motif was more frequently detected than expected by chance (see Methods). Here we provide the number of bases at which we start to observe a significant overrepresentation.
b Oryza sativa L. ssp. Indica.
c Oryza sativa L. ssp. japonica.
d Because our counting procedure was limited to a minimum of two repeats, we cannot make any inference about shorter repeats consisting of less than two repeats. For those cases in which we observed an overrepresentation at two repeat units, we used the “≤” symbol to indicate this uncertainty.