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Databases of Genomic Sequences
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| NCBI http://www.ncbi.nlm.nih.gov/
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| TIGRhttp://www.tigr.org/
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| Sanger http://www.sanger.ac.uk/
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| Ensemblhttp://www.ensembl.org/
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| TAIRhttp://www.arabidopsis.org/home.html
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| SGDhttp://genome-www.stanford.edu/Saccharomyces/
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| MGDhttp://www.informatics.jax.org/
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| Human Genome Browserhttp://www.genome.ucsc.edu/
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| NISC http://www.nisc.nih.gov/
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| Rat Genome Database http://www.rgd.mcw.edu/
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| FlyBasehttp://flybase.bio.indiana.edu/
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| Wormbasehttp://brie2.cshl.org:8081/
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| ExoFishhttp://www.genoscope.cns.fr/externe/tetraodon/
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Gene Annotation/Prediction Programs
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| GENSCANhttp://genes.mit.edu/GENSCAN.html
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| GenomeScanhttp://genes.mit.edu/genomescan/
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| Sim4http://pbil.univ-lyon1.fr/sim4.html
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| EST Genomehttp://www.sanger.ac.uk/Software/Alfresco/download.shtml
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| FGENESHhttp://genomic.sanger.ac.uk/gf.html. |
| GrailEXPhttp://compbio.ornl.gov/grailexp/
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| TwinScanhttp://genes.cs.wustl.edu/query.html
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| Geniehttp://www.fruitfly.org/seq_tools/genie.html
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| SGPhttp://kiwi.ice.mpg.de/sgp-1/
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| SLAMhttp://baboon.math.berkeley.edu/∼syntenic/slam.html
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Servers and Programs for local and global alignments
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| PipMakerhttp://bio.cse.psu.edu/
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| VISTAhttp://www-gsd.lbl.gov/vista/
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| Pattern Hunterhttp://www.bioinformaticssolutions.com/ downloads/ph-academic/ |
| ClustalWhttp://www.ebi.ac.uk/clustalw/
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| BLASThttp://www.ncbi.nlm.nih.gov/BLAST
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| LALIGNhttp://www.ch.embnet.org/software/LALIGN_form. html |
| SSEARCHhttp://www.biology.wustl.edu/gcg/ssearch.html
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| BLAThttp://www.genome.ucsc.edu/cgi-bin/hgBlat? command=start |
| SSAHAhttp://bioinfo.sarang.net/wiki/SSAHA
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| LAGANhttp://lagan.stanford.edu
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| AVIDhttp://baboon.math.berkeley.edu/mAVID
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