The Larger Human Repeat Families Defined by RECON
| RECON family | RepeatMasker family | Copy[i] number | Cluster[ii] | Consensus[iii] | |||||
| fp1 | fp2 | fp | fn | ||||||
| f1 | Alu | 1425 | 1 | 1 | 1/424 | 16/311 | |||
| f230 | Alu | 10 | 0 | 0 | 3/77 | 111/185 | |||
| f7 | L1 | 292 | 2 | 1 | 0/6139 | 15/6152 | |||
| f8 | L1 | 28 | 0 | 0 | 0/906 | 5391/6305 | |||
| f13 | L1 | 22 | 0 | 0 | 1/518 | 5668/6184 | |||
| f22 | L1 | 17 | 0 | 0 | 3/1481 | 4655/6146 | |||
| f57 | L1 | 14 | 0 | 0 | 1/690 | 5429/6146 | |||
| f146 | L1 | 13 | 0 | 0 | 2/273 | 6031/6305 | |||
| f10 | MaLR(LTR) | 63 | 0 | 0 | 0/365 | 1/364 | |||
| f46 | MaLR(LTR+internal) | 44 | 0 | 0 | 3/2116 | 0/1935 | |||
| f12 | MaLR(LTR) | 17 | 0 | 0 | 3/211 | 218/426 | |||
| f28 | MER41 | 18 | 0 | 0 | 2/559 | 1/554 | |||
| f17 | Tigger1 | 14 | 0 | 0 | 2/1021 | 1405/2418 | |||
| f179 | New | 13 | 0 | 13 | n/a | n/a | |||
| f156 | MER1 | 10 | 0 | 0 | 3/199 | 99/297 | |||
[i] Number of defined elements inRECON family.
[ii] fp1: Number of elements in RECON family corresponding to a different RepeatMaskerfamily. fp2: Number of elements in RECONfamily not annotated by RepeatMasker.
[iii] fp: False positive positions vs length of the consensus. fn: False negative positions vs length of theRepeatMasker sequence. The consensus of the L1-corresponding families match different L1 sequences inRepeatMasker, as do the MaLR-corresponding families.