Table 3.

PVA-Specific Oligonucleotides Used in the Genomic Segment Amplification

Primer pair (forward-reverse) Region amplified (first and last nt) Oligonucleotide sequence
Forward Reverse
61475-FO15R2-1259aataaacaactacaaaacaagtgtcctcatccatgttcaaattc
5960-59611053-2426tattcaacaggggatgttttctggctccaaccctgtagtgcttcat
51568-515672268-3317gaattttggttgatcacgatctcacttacagtactccaattccaggc
FO14F-FO14R3099-4405caggctgtgaatggattgcaagacttcattataacttgccacgtaca
71832-66954227-5528gtgtccgccacaccaccaggctggaactgcactgcctctaagta
71106-711055152-6375ttgagaaattttaaatgtgatgctcaagggcccaaaacctaatccaa
72270-62816256-6983caacatctatgtttacacccttgggtgtatactgcctctc
FO2F-FO1R6799-7570ttcccaaaggattcacagaaacgtttcaattggtgcagctgt
FO1F-FO5R7180-8260gagaggcttacaacacaggatctcatgtgatctatcccactcc
FO5F-FO7R7869-9111caccagatggcacagttgttactctcaaggtgcgttgaagacc
FO7F-41418747-9565gctatcttacaaaccaaagcaagtccctgacagttgaaacataaa

[i] Genome region coordinates follow the PVA-B11 sequence (AJ296311). Oligonucleotides are shown in the 5′ to 3′ direction.