Number of Matched Protein Pairs Between the Predictions
| Threshold | Prediction | Train | MIPS | MIPS1 | Fold | Z score | P value |
| All | 20221620 | 5719 | 2575 | 1417 | 1 | — | |
| >0.00 | 125435 | 5717 | 1263 | 106 | 12.63 | 33.70 | 3.88e-249 |
| ≥0.20 | 23182 | 5154 | 1074 | 51 | 40.36 | 44.25 | — |
| ≥0.40 | 16287 | 4847 | 993 | 47 | 58.61 | 51.59 | — |
| ≥0.60 | 12748 | 4647 | 933 | 43 | 75.73 | 56.31 | — |
| ≥0.80 | 10441 | 4437 | 882 | 40 | 95.05 | 61.01 | — |
| ≥0.975 | 9413 | 4289 | 845 | 35 | 97.45 | 57.80 | — |
[i] (Prediction) fp = 2.5E-4, fn = 0.80, the training set (Train), the MIPS data (MIPS), and the MIPS excluding the training data (MIPS1), respectively. The corresponding statistics (Fold, Z score, and P value) are also given.