Table 3.

Training Set TUs Regulated by CRP

Operon Site sequence Position Score
ansB TTTTGTTACCTGCCTCTAACTT −12510.57
araC AAGTGTGACGCCGTGCAAATAA −23013.93
araBAD TTATTTGCACGGCGTCACACTT −13113.93
araE AATTGGAATATCCATCACATAA −13112.78
araFG-araH1-araH2 CGATGTGATATTGCTCTCCTAT −16310.0
caiTABCDE TATTGTTAAGTTCCTCACCAAT −33510.97
TATTGTTTTATGGATCACCAAT −27810.88
AAATGTGATACCAATCACAGAA −15820.42
crp GTATGCAAAGGACGTCACATTA −13711.71
cyaA AGGTGTTAAATTGATCACGTTT −17312.67
dadAX AGATGTGAGCCAGCTCACCATA −11716.48
deoCABD TTATTTGAACCAGATCGCATTA −15017.12
AATTGTGATGTGTATCGAAGTG −9711.87
dsdXA TAAAGTGAACCATATCTCAATT −15516.77
epd-pgk AAGTGTGATGTGAGTCAGATAA −21317.30
focA-pf1B AGATATGATCTATATCAATTTC −7810.14
fur AAATGTAAGCTGTGCCACGTTT −15813.81
galETKM TAATTTATTCCATGTCACACTT −7813.12
galS TGCTGTGACTCGATTCACGAAG −9510.41
glgS AAGTGTGATCGGGGACAATATA −12411.51
glnALG CTTTGTGATCGCTTTCACGGAG −2699.23
glpTQ ATGTGTGCGGCAATTCACATTT −12917.25
glpD TAATGTTATACATATCACTCTA −11715.65
glpFK TTTTATGACGAGGCACACACAT −14210.48
gntT TAATATGACCAACCTCTCATAA −23713.80
lacZYA TAATGTGAGTTAGCTCACTCAT −11018.32
malEFG TTATGTGCGCATCTCCACATTA −16111.25
TTCTGTAACAGAGATCACACAA −13216.06
malI TAGTGAGGCATAAATCACATTA −10215.70
AAACGTTTTATCTGTCACATAA −4211.14
malK-lamB-malM TTGTGTGATCTCTGTTACAGAA −25516.06
TAATGTGGAGATGCGCACATAA −22611.25
malS ATTTGAGAGTTGAATCTCAAAT −27013.97
AAATGTGGGGGTTATCGCAAAA −15311.26
malT AATTGTGACACAGTGCAAATTC −14313.48
malXY TTATGTGACAGATAAAACGTTT −15511.14
TAATGTGATTTATGCCTCACTA −9515.70
nagE TTTGGTGACAAAACTCACAAAA −17714.51
ATTTGCGATACGAATTAAATTT −14312.59
nagBACD TTTTGTGAGTTTTGTCACCAAA −17814.51
AAATTTAATTCGTATCGCAAAT −21212.59
nupG AAATGTTATCCACATCACAATT −11920.43
TTATTTGCCACAGGTAACAAAA −6910.59
ompA ATGCCTGACGGAGTTCACACTT −18812.84
ppiA TTTTGTGATCTGTTTAAATGTT −20410.23
AGAGGTGATTTTGATCACGGAA −15112.33
proP ATGTGTGAAGTTGATCACAAAT −22820.45
ptsHI-crr TTTTGTGGCCTGCTTCAAACTT −33814.43
rhaBAD AATTGTGAACATCATCACGTTC −12715.16
AAATGCGGTGAGCATCACATCA −16212.41
rhaT AGATGTGAAGCAAATCACCCAC −14513.65
rpoS AACTGCGACCACGGTCACAGCG −2708.77
sdhCDAB TATCGTGACCTGGATCACTGTT −31416.41
tdcABC ATTTGTGAGTGGTCGCACATAT −8215.0
AAATGTGACATGCCGCATTATT −38410.83
tnaLAB GATTGTGATTCGATTCACATTT −9519.61
tsx AACTGTGAAACGAAACATATTT −12912.93
udp TTATGTGATTTGCATCACTTTT −14520.62
CATGGTGATGAGTATCACGAAA −9311.04
uhpT AAGCGTGATGCATCTCACCTTT −14516.51
yhfa TAATGTGACGTCCTTTGCATAC −18711.71

[i] This table contains top scoring site for all 46 TUs, plus any additional sites with scores above 10 bits. Position of a CRP site is relative to the translation start of the first downstream gene. The same rule applies to all sites in Tables 3 T4 T5 T6 T7 T8.