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Table 2.

Classification of E. cuniculi Genes According to Clusters of Orthologous Groups of Proteins (COGs)

CDS#	Gene description	%ID	CDS#	Gene description	%ID
Translation, ribosomal structure and biogenesis		Cell motility and secretion
0016	Ribosomal protein L8	68	0031	Actin	79
0054	Elongation factor 2	72	0041	Myosin heavy chain	43
0076	Ribosomal protein S12	47	0108	Dynamin	52
0093	Nucleolar protein p120	51	Inorganic ion transport and metabolism
0123	snoRNP	51	0118	Putative frataxin	59
Transcription		Signal transduction mechanisms
0028	Clipper/cleavage and		0048	Serine/threonine kinase	61
	polyadenylation factor	71	Energy metabolism and conversion
0032	Transcription factor	69	0009	Fructose bi-phosphate
0035	RNA polymerase II			aldolase	54
	mediator	54	0064	Alpha, alpha-trehalose-	65
0039	RNA binding protein	57		phosphate synthase
0045	DNA-directed RNA pol I	58	0071	Trehalose-6-P phosphatase	39
0051	Transcription factor IIH	47	0081	Aldose reductase	55
0068	RNA binding protein	49	Carbohydrate transport and metabolism
0080	TBP-1	48	0050	N-acetylglucosamine-
0120	TFIID subunit	61		phosphate mutase	55
DNA replication, recombination		Amino acid transport and metabolism
and repair		0004	Serine hydroxy methyl
0020	Helicase	60		transferase	67
0030	DNA repair protein	41	0129	Serine hydroxy methyl transferase	67
0091	DNA repair helicase	68
0103	Chromosome assembly	41	Nucleotide transport and metabolism
	protein		0002	Dihydrofolate reductase	52
0105	Replication factor C	47	0003	Thymidylate synthase	73
Cell division and chromosome partitioning		0058	Thymidine kinase	52
0022	Putative cell division	50	0109	Guanylate kinase	60
0088	Putative microtubule		0130	Thymidylate synthase	73
	associated protein	42	0131	Dihydrofolate reductase	52
0110	Cell division cycle		Coenzyme metabolism
	protein 48 homolog	77	0036	NIFU protein	83
0119	Cell division cycle 42	52	Lipid metabolism
0124	Septin homolog protein	47	0085	CDP-diacylglycerol–
Posttranslational modification, protein turnover,			inositol 3 phosphatidyl
chaperones			transferase	48
0001	Aminopeptidase	47	General function prediction only
0042	DNAJ like-protein	52	0005	ABC transporter	46
0078	Ubiquitin-conjugating		0023	Cell differentiation	51
	enzyme	56	0038	Golgi protein	57
0086	Ubiquitin-conjugating		0059	Zinc finger protein	46
	enzyme	59	0062	Zinc finger protein	44
0100	Serine protease	49	0067	Zinc finger protein	72
0132	Aminopeptidase	47	0116	Coatomer protein	48
Cell envelope biogenesis, outer membrane		0117	WD-repeat protein	45
0126	Chitin synthase	65	0128	ABC transporter	46

[i] Gene numerotation is identical to that shown in Fig. 3.

[ii] ID represents the percentage of identity relative to the most relevant database find.