Table 1.

L1 Inversions Analyzed

Accession # Subfamily % Identity[i] Target Site Duplication (TSD) TSD length
AC007486 Ta99.3aatt/AAAAAATTTTGG/gcgc12
AC006131 Pre-Ta99.3ggtc/ACAAAAGATACACTCCTTT/tgac19
AC002122 Ta99.7cttt/AAAATTTTTTAATG/aatc14
aL022153Pre-Ta99.5cttt/AAAAAATACCGATTCC/tgag16
AC004883 Ta99.9attt/GATAATATGTT/gcat11
AC004491 Ta99.2ctct/AAAGAAGATATAT/acaa13
AL031117 Pre-Ta99.5cttc/AAAATGTTAAGGGTC/atct15
AL0390998Ta99.0atat/AAAAGATCGGTGA/aaaa13
Z84814 Ta99.6catt/AAAAACAGCTATAGTTT/atca17
Z95325 Ta99.5tctc/AAAAACAAAACAA/aaca13
AC004053 Ta99.3gtat/AAGAATGCTTGTGATTTTTG/taca20
AL034425 Pre-Ta99.3actc/AAAACTTGGCTGTC/gagg14
Z70758 Pre-Ta99.1actt/AGAAGTCCATGAATCCA/tgct17
AC004220 Ta99.4agtt/AAGAAGGAGGGGA/gact13
AL023284 Ta99.1catt/AAAAAGCATATAGTAT/acac16
AF)36938Pre-Ta99.0aaag/AAAAAAATGTTTCTAATTC/aaga19
U09115 Ta99.4agtt/AAATCATCTGCTGCT/gtgg15

[i] Comparison with a consensus of active L1 elements.