Table 1.

Groups of Collinear Segment Pairs Between Rice and Arabidopsis

Group Interruptions Rice Putative Function Arabidopsis
BAC ORF BAC ORF
13 AP002882[1] BAB39868.1putative receptor protein AC011914_F14K14[1]F14K14.4/AT1G68749
(∼41 kb) BAB39876.1putative phosphoenolpyruvate carboxylase(∼21 kb)F14K14.1/AT1G68750
BAB39877.1unknown proteinF14K14.18/AT1G68780
22 AP003338[1] BAB39434.1receptor serine/threonine kinase PR5K AB005247_MXA21[5]MXA21_170/AT5G38280
(∼36 kb) BAB39435.1receptor serine/threonine protein kinase-like(∼19 kb)MXA21_150/AT5G38260
BAB39439.1receptor serine/threonine protein kinase-likeMXA21_130/AT5G38240
33 AP003338[1] BAB39434.1receptor serine/threonine kinase PR5K, putative AC007152_F1O19[1]F1O19.1/AT1G66930
(∼36 kb) BAB39435.1hypothetical protein(∼30 kb)F1O19.6/AT1G66980
BAB39439.1hypothetical proteinF1O19_4/AT1G67000
40 AP003233[1] BAB55519.1putative protein AB012241_K18L3[5]K18L3_30/AT5G37870
(∼10 kb) BAB55521.1putative protein(∼29 kb)K18L3_70/AT5G37910
BAB55522.1putative proteinK18L3_90/AT5G37930
50 AP002483[1] BAB16455.1putative protein AL137189_F7J8[5]F7J8_200/AT5G01220
(∼23 kb) BAB16456.1putative protein(∼29 kb)F7J8_180/AT5G01200
BAB16458.1oligopeptide transporter-like proteinF7J8_160/AT5G01180
60 AP003311[1] BAB40110.1putative protein AL137189_F7J8[5]F7J8_200/AT5G01220
(∼23 kb) BAB40111.1putative protein(∼29 kb)F7J8_180/AT5G01200
BAB40113.1oligopeptide transporter-like proteinF7J8_160/AT5G01180
76 AP002540[1] BAB43990.1ubiquitin-protein ligase E3-alpha-like protein AL162874_T1E22[5]T1E22_60/AT5G02300
(∼103 kb) BAB43991.1eceriferum3 (CEP3)(∼37 kb)T1E22_70/AT5G02310
BAB44010.1metallothionein 2bT1E22_140/AT5G02380
BAB44011.1putative proteinT1E22_150/AT5G02390
87 AP002522[1] BAB03613.1putative protein AL162971_T22P11[5]T22P11_70/AT5G02480
(∼20 kb) BAB03618.1putative protein(∼29 kb)T22P11_130/AT5G02540
BAB03624.1putative proteinT22P11_160/AT5G02570
94 AP002522[1] BAB03613.1unknown protein AC004684_F13M22[2]F13M22.7/AT2G37570
(∼38 kb) BAB03618.1putative oxidoreductase(∼12 kb)F13M22.4/AT2G37540
BAB03619.1hypothetical proteinF13M22.3/AT2G37530
103 AP003045[1] BAB44058.1hypothetical protein AC009326_MZB10[3]MZB10.14/AT3G09110
(∼34 kb) BAB44062.1hypothetical protein(∼8 kb)MZB10.15/AT3G09120
BAB44065.1hypothetical proteinMZB10.17/AT3G09140
111 AP003045[1] BAB44060.1putative protein AL137189_F7J8[5]F7J8_100/AT5G01120
(∼23 kb) BAB44062.1putative protein(∼9 kb)F7J8_110/AT5G01130
BAB44065.1putative proteinF7J8_130/AT5G01150
120 AP002523[1] BAB17059.1putative glucosyl transferase AC006282_F13K3[2]F13K3.15/AT2G36750
(∼2 kb) BAB17060.1putative glucosyl transferase(∼9 kb)F13K3.17/AT2G36770
BAB17061.1putative glucosyl transferaseF13K3.18/AT2G36780
134 AP002524[1] BAB07963.1putative protein AL022537_F4D112[4]F4D11.180/AT4G32620
(∼26 kb) BAB07965.1putative protein(∼13 kb)F4D11.190/AT4G32610
BAB07971.1putative proteinF4D11.200/AT4G32600
144 AP002482[1] BAA99514.1hypothetical protein AL078620_F23K16[4]F23K16_50/AT4G39420
(∼19 kb) BAA99515.1hypothetical protein(∼27 kb)F23K16_60/AT4G39430
BAA99516.1hypothetical proteinF23K16_80/AT4G39450
BAA99522.1cytochrome P450-like proteinF23K16_110/AT4G39480
BAA99523.1cytochrome P450-like proteinF23K16_120/AT4G39490
150 AP002743[1] BAA99424.1phytochrome-associated protein PAP2AL07840_F19B15[4]F19B15.110/AT4G29080
(∼11 kb) BAA99425.1hexokinase(∼57 kb)F19B15.160/AT4G29130
BAA99426.1hypothetical proteinF19B15.180/AT4G29150

[i] For each group, GenBank accession numbers for rice andArabidopsis BAC are followed by their chromosome location and approximate linkage size. Putative protein function information was retrieved from the MATDB database. Interruptions refer to the number of rice genes having Arabidopsis homologs that do not fall into the collinear region. The complete table can be accessed athttp://www.genome.org.