Split Genes
| Strand | Begin | End | No. of split genes | Comments |
| F | 45,358 | 130,409 | 5 | gene on opposite strand |
| F | 373,286 | 391,500 | 3 | |
| F | 445,189 | 456,317 | 3 | |
| R | 477,171 | 487,236 | 2 | |
| F | 568,986 | 575,533 | 2 | |
| R | 679,874 | 691,416 | 2 | |
| F | 757,457 | 821,487 | 4 | one gene on same strand |
| R | 1,094,414 | 1,182,415 | 2 | two genes on opposite strand |
| R | 1,398,183 | 1,413,067 | 2 | |
| F | 1,506,022 | 1,521,842 | 2 | gene on opposite strand |
| F | 1,558,915 | 1,561,694 | 2 | |
| F | 1,565,296 | 1,585,380 | 3 | |
| R | 1,653,146 | 1,667,970 | 2 | |
| R | 1,718,580 | 1,737,780 | 2 | |
| R | 1,747,063 | 1,752,780 | 2 | |
| R | 2,220,563 | 2,224,367 | 2 | |
| F | 2,463,394 | 2,488,789 | 2 | |
| F | 2,619,967 | 2,639,006 | 3 | |
| R | 2,714,362 | 2,736,449 | 2 |
[i] All std3 gene annotations are split into two or more genes by all three Genie programs. The Begin and End gene coordinates are from the std3 annotations. Comments are given for the reason of the splitting when genes within genes occur.