The Performance on the std3 Set
| No database matches | All but EST matches | Including all matches | Predictions >200 | Original submission | |
| Base level | |||||
| Sensitivity | 74.0 | 80.6 | 81.1 | 81.1 | 77.9 |
| Specificity | 91.3 | 92.5 | 91.1 | 91.5 | 90.7 |
| Exon level | |||||
| Sensitivity | 48.3 | 50.4 | 51.4 | 51.4 | 50.1 |
| Specificity | 58.1 | 56.7 | 52.7 | 54.5 | 53.2 |
| Missing exons | 29.8 | 24.2 | 23.1 | 23.1 | 25.6 |
| Wrong exons | 15.6 | 15.1 | 21.3 | 18.7 | 20.9 |
| Gene level | |||||
| Sensitivity 100% | 26.1 | 28.8 | 30.2 | 30.2 | 29.3 |
| Sensitivity 99% | 28.8 | 32.0 | 33.3 | 33.3 | 32.4 |
| Sensitivity 95% | 33.3 | 39.2 | 42.3 | 42.3 | 41.4 |
| Specificity 100% | 34.3 | 33.9 | 30.2 | 32.4 | 30.4 |
| Specificity 99% | 37.9 | 37.6 | 33.3 | 35.7 | 33.6 |
| Specificity 95% | 43.8 | 46.0 | 42.3 | 45.4 | 43.0 |
| Missing genes | 16.7 | 9.9 | 9.9 | 9.9 | 13.2 |
| Wrong genes | 7.7 | 6.9 | 16.7 | 10.6 | 16.4 |
[i] In the column Predictions >200, 15 predicted genes with a coding region <200 bp long were removed from the predictions using all database matches. Other columns correspond to Table 2.