Markup | Genome Research

Table 4.

Performance of Gene-finding Programs on the BRCA2 1.4-Mb Region of Human Chromosome 13

	CC	Snb	Spb	Pe	Ce	Sne	Snep	Spe	Pg.	Cg	PCg
`GENSCAN`	0.68	90	53	271	109	65	80	40	49	0	19
`Fgenesh`	0.80	89	73	188	115	69	80	61	25	0	17
`Fgenes`	0.69	79	62	298	110	66	86	37	34	0	19
`GENSCAN` masked	0.76	90	66	217	109	65	80	50	32	0	19
`Fgenesh` masked	0.84	89	82	172	114	68	79	66	19	0	17
`Fgenes` masked	0.73	80	68	257	107	64	85	42	38	0	19

[i] The BRCA2 region contains 20 verified genes and 168 exons.

[ii] (CC) The correlation coefficient reflecting the accuracy of prediction at the nucleotide level: (Snb and Spb) sensitivity and specificity at the base level (%); (Sne and Spe) sensitivity and specificity at the exon level (%), (Snep) exon sensitivity, including partially correct predicted exons (%); (PCg) number of partially correct genes.