Markup | Genome Research

Table 2.

Accuracy of Gene Prediction Tools in the Set of Semiartificial Genomic (SAG) Sequences (Gen178)

Program		No.		Nucleotide		Exon		Gene
				Nucleotide		Sn		Gene		Sp		$\frac{Sn + Sp}{2}$		ME		WE
						Sn				Sp		$\frac{Sn + Sp}{2}$		ME		WE
Sn	Sp	CC	MG	WG
GenScan	43	0.89	0.64	0.76	0.64	0.44	0.54	0.14	0.41	0.03	0.28
		0.92	0.92	0.91	0.76	0.76	0.76	0.09	0.09
GeneWise	43	0.98	0.98	0.97	0.88	0.91	0.89	0.06	0.02
		0.98	0.98	0.97	0.88	0.91	0.89	0.06	0.02
Procrustes	43	0.93	0.94	0.93	0.80	0.75	0.77	0.10	0.16
		0.93	0.95	0.93	0.76	0.82	0.79	0.11	0.04

[i] (Italics) The accuracy values in the set of single gene sequences (from Table 1).