NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Active channels 506.0
Mean read length 4,236.5
Mean read quality 12.2
Median read length 3,148.0
Median read quality 12.3
Number of reads 2,048,879.0
Read length N50 7,099.0
Total bases 8,679,993,542.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 2048836 (100.0%) 8680.0Mb
>Q7 2046960 (99.9%) 8672.3Mb
>Q10 1730592 (84.5%) 7412.1Mb
>Q12 1132005 (55.2%) 4966.2Mb
>Q15 120565 (5.9%) 442.5Mb
Top 5 highest mean basecall quality scores and their read lengths
1 22.6 (240)
2 22.5 (244)
3 22.3 (457)
4 22.3 (165)
5 22.1 (211)
Top 5 longest reads and their mean basecall quality score
1 63781 (11.5)
2 61750 (14.1)
3 60710 (8.1)
4 56986 (8.2)
5 56761 (12.5)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

Violin plot of sequencing speed over time