# Configuration file for the Sphinx documentation builder.
#
# For the full list of built-in configuration values, see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html

# -- Project information -----------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information

project = 'scPSS: single-cell Pathological Shift Scoring'
copyright = '2025, Samin Rahman Khan'
author = 'Samin Rahman Khan'

import os
import sys
sys.path.insert(0, os.path.abspath('..'))

# -- General configuration ---------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration

extensions = [
    'nbsphinx',
    'sphinx.ext.autodoc',
    'sphinx.ext.napoleon',
    'sphinx.ext.viewcode',
]
autodoc_default_options = {
    'members': True,
    'undoc-members': True,
    'show-inheritance': True,
}

templates_path = ['_templates']
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']



# -- Options for HTML output -------------------------------------------------
# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output

html_theme = 'sphinx_rtd_theme'
html_static_path = ['_static']
nbsphinx_execute = 'never'
