#!/bin/bash
# Orftcr.sh

export NA=$1
cd ${NA}

#lowres bin analysis first
printf "${NA}_Cdipy_bk_plus.wig\n${NA}_Cdipy_bk_minus.wig\n" | perl ../notel_cpd_orf_bins.pl >${NA}_Cdipy_bk_tcrbins_matrix_notel_nochrVins.txt

printf "${NA}_Cdipy_bk_tcrbins_matrix_notel_nochrVins.txt\n" | perl ../tcr_bins_allgenes.pl >${NA}_Cdipy_bk_tcrbins_allgenes_notel_nochrVins.txt

#highres analysis second
