index	origin	start	end
1	Chr1	10000	94378242
2	Chr1	94378243	98953963
3	Chr1	98953964	122026459
CEN1	Chr1	122026460	125184587
4	Chr1	125184588	248946421
5	Chr2	10000	92188145
CEN2	Chr2	92188146	94090557
6	Chr2	94090558	242183528
7	Chr3	10000	90772458
CEN3	Chr3	90772459	93655574
8	Chr3	93655575	198235558
9	Chr4	10000	49708100
CEN4	Chr4	49708101	51743951
10	Chr4	51743952	190204554
11	Chr5	10000	46485900
CEN5	Chr5	46485901	50059807
12	Chr5	50059808	181478258
13	Chr6	60000	58553888
CEN6	Chr6	58553889	59829934
14	Chr6	59829935	83187549
15	Chr6	83187550	92031604
16	Chr6	92031605	100367084
17	Chr6	100367085	103931714
18	Chr6	103931715	170745978
19	Chr7	10000	58169653
CEN7	Chr7	58169654	60828234
20	Chr7	60828235	96529729
21	Chr7	96529730	96529730
22	Chr7	96529731	159335972
23	Chr8	60000	44033744
CEN8	Chr8	44033745	45877265
24	Chr8	45877266	49725269
25	Chr8	49725270	58960400
26	Chr8	58960401	145078635
27	Chr9	10000	7385901
28	Chr9	7385902	8130124
29	Chr9	8130125	15697586
30	Chr9	15697587	43236167
CEN9	Chr9	43236168	45518558
31	Chr9	45518559	138334716
32	Chr10	10000	39686682
CEN10	Chr10	39686683	41593521
33	Chr10	41593522	53236179
34	Chr10	53236180	62679098
35	Chr10	62679099	116772916
36	Chr10	116772917	125769829
37	Chr10	125769830	133787421
38	Chr11	60000	51078348
CEN11	Chr11	51078349	54425074
39	Chr11	54425075	135076621
40	Chr12	10000	34769407
CEN12	Chr12	34769408	37185252
41	Chr12	37185253	85445312
42	Chr12	85445313	88366404
43	Chr12	88366405	133265308
44	Chr13	16000000	16000000
CEN13	Chr13	16000001	18051248
45	Chr13	18051249	114354327
46	Chr14	16000000	16000000
CEN14	Chr14	16000001	18173523
47	Chr14	18173524	45324856
48	Chr14	45324857	46629559
49	Chr14	46629560	48016424
50	Chr14	48016425	64495726
51	Chr14	64495727	73987971
52	Chr14	73987972	106883717
53	Chr15	17000000	17000000
CEN15	Chr15	17000001	19725254
54	Chr15	19725255	86098121
55	Chr15	86098122	93294610
56	Chr15	93294611	101981188
57	Chr16	10000	36311158
CEN16	Chr16	36311159	38280682
58	Chr16	38280683	90228344
59	Chr17	60000	22813679
CEN17	Chr17	22813680	26885980
60	Chr17	26885981	30780078
61	Chr17	30780079	31936302
62	Chr17	31936303	83247440
63	Chr18	10000	15460899
CEN18	Chr18	15460900	20861206
64	Chr18	20861207	80263284
65	Chr19	60000	24498980
CEN19	Chr19	24498981	27190874
66	Chr19	27190875	58607615
67	Chr20	60000	2136815
68	Chr20	2136816	19174707
69	Chr20	19174708	21251523
70	Chr20	21251524	26436232
CEN20	Chr20	26436233	30038348
71	Chr20	30038349	64334166
72	Chr21	5010000	10864560
CEN21	Chr21	10864561	12915808
73	Chr21	12915809	46699982
74	Chr22	10510000	12954788
CEN22	Chr22	12954789	15054318
75	Chr22	15054319	50808467
76	ChrX	10000	58605579
CENX	ChrX	58605580	62412542
77	ChrX	62412543	156030894
78	ChrY	10000	10316944
CENY	ChrY	10316945	10544039
79	ChrY	10544040	57217414
---
chromosome	KT	telo1_len	telo2_len
Chr1a	deleted	0	0
Chr1b	1+,2+,3+,CEN1+,4+	0	0
Chr2a	5+,CEN2+,6+	10000	10000
Chr2b	5+,CEN2+,6+	10000	10000
Chr3a	7+,CEN3+	10000	60000
Chr3b	7+,CEN3+,8+	10000	60000
Chr4a	9+,CEN4+,10+	10000	10000
Chr4b	9+,CEN4+,10+	10000	10000
Chr5a	11+,CEN5+,12+	10000	60000
Chr5b	11+,CEN5+,12+	10000	60000
Chr6a	13+,CEN6+,14+,17+,16+,15+,18+	60000	60000
Chr6b	13+,CEN6+,14+,15+,16+,17+,18+	60000	60000
Chr7a	19+,CEN7+,20+,2+,21+,22+	10000	10000
Chr7b	19+,CEN7+,20+,21+,22+	10000	10000
Chr8a	23+,CEN8+	60000	60000
Chr8b	23+,CEN8+,24+,25+,26+	60000	60000
Chr9a	27+,28+,29+,30+,CEN9+,31+	10000	60000
Chr9b	27+,48-,28-,28+,48+,49+,30+,CEN9+,31+	10000	60000
Chr9c	27+,28+,29+,30+,CEN9+,31+	10000	60000
Chr10a	32+,CEN10+,33+,35+,37+	10000	10000
Chr10b	32+,CEN10+,33+,34+,35+,36+,37+	10000	10000
Chr11a	38+,CEN11+,39+	60000	10000
Chr11b	38+,CEN11+,39+	60000	10000
Chr12a	40+,CEN12+,41+,42+,42+,43+	10000	10000
Chr12b	40+,CEN12+,41+,42+,43+	10000	10000
Chr13a	44+,CEN13+,45+	16000000	10000
Chr13b	44+,CEN13+,45+	16000000	10000
Chr14a	46+,CEN14+,47+,29+,50+,51+,51+,52+	16000000	160000
Chr14b	46+,CEN14+,47+,48+,49+,50+,51+,52+	16000000	160000
Chr15a	53+,CEN15+,54+,55+,55+,56+	17000000	10000
Chr15b	53+,CEN15+,54+,55+,56+	17000000	10000
Chr16a	57+,CEN16+,58+	10000	110000
Chr16b	57+,CEN16+,58+	10000	110000
Chr17a	59+,CEN17+,60+,62+	60000	10000
Chr17b	59+,CEN17+,60+,61+,62+	60000	10000
Chr18a	63+,CEN18+,64+	10000	110000
Chr18b	63+,CEN18+,64+	10000	110000
Chr19a	65+,CEN19+,66+	60000	10000
Chr19b	65+,CEN19+,66+	60000	10000
Chr20a	68+,69+,70+,CEN20+,71+	60000	110000
Chr20b	67+,68+,69+,70+,CEN20+,71+	60000	110000
Chr21a	72+,CEN21+,73+	5010000	10000
Chr21b	72+,CEN21+,73+	5010000	10000
Chr22a	74+,CEN22+,75+	10510000	10000
Chr22b	74+,CEN22+,75+	10510000	10000
ChrXa	76+,CENX+,77+	10000	10000
ChrYa	78+,CENY+,79+	10000	10000
---
initialization
	autosomes: ['Chr1', 'Chr2', 'Chr3', 'Chr4', 'Chr5', 'Chr6', 'Chr7', 'Chr8', 'Chr9', 'Chr10', 'Chr11', 'Chr12', 'Chr13', 'Chr14', 'Chr15', 'Chr16', 'Chr17', 'Chr18', 'Chr19', 'Chr20', 'Chr21', 'Chr22']
	autosomal copy number: 1
	sex chromosomes: ['ChrY']
block 1: NF1
	deletion on segments [61+], from Chr17a to Chr17a
block 2: random events
	deletion on segments [34+], from Chr10a to Chr10a
	balanced reciprocal translocation on segments [17+], from Chr6a to Chr6a
	balanced reciprocal translocation on segments [15+], from Chr6a to Chr6a
	chromosomal duplication on segments [27+,28+,29+,30+,CEN9+,31+], from Chr9a to Chr9a
	balanced reciprocal translocation on segments [29+], from Chr9b to Chr14a
	balanced reciprocal translocation on segments [48+,49+], from Chr14a to Chr9b
	tandem duplication on segments [42+], from Chr12a to Chr12a
	arm deletion on segments [8+], from Chr3a to Chr3a
	nonreciprocal translocation on segments [2+], from Chr1a to Chr7a
	deletion on segments [25+], from Chr8a to Chr8a
	deletion on segments [36+], from Chr10a to Chr10a
	deletion on segments [67+], from Chr20a to Chr20a
	tandem duplication on segments [51+], from Chr14a to Chr14a
	left duplication inversion on segments [28+,48+], from Chr9b to Chr9b
	arm deletion on segments [24+,26+], from Chr8a to Chr8a
	chromosomal deletion on segments [1+,3+,CEN1+,4+], from Chr1a to Chr1a
	tandem duplication on segments [55+], from Chr15a to Chr15a
