index	origin	start	end
1	Chr1	10000	122026459
CEN1	Chr1	122026460	125184587
2	Chr1	125184588	167147332
3	Chr1	167147333	173893007
4	Chr1	173893008	248946421
5	Chr2	10000	10317145
6	Chr2	10317146	18214224
7	Chr2	18214225	34047971
8	Chr2	34047972	40142807
9	Chr2	40142808	92188145
CEN2	Chr2	92188146	94090557
10	Chr2	94090558	242183528
11	Chr3	10000	2070343
12	Chr3	2070344	10936031
13	Chr3	10936032	90772458
CEN3	Chr3	90772459	93655574
14	Chr3	93655575	198235558
15	Chr4	10000	49708100
CEN4	Chr4	49708101	51743951
16	Chr4	51743952	190204554
17	Chr5	10000	10000
18	Chr5	10001	12533192
19	Chr5	12533193	46485900
CEN5	Chr5	46485901	50059807
20	Chr5	50059808	157631743
21	Chr5	157631744	163782091
22	Chr5	163782092	181478258
23	Chr6	60000	58553888
CEN6	Chr6	58553889	59829934
24	Chr6	59829935	86451310
25	Chr6	86451311	90466303
26	Chr6	90466304	170745978
27	Chr7	10000	58169653
CEN7	Chr7	58169654	60828234
28	Chr7	60828235	159335972
29	Chr8	60000	44033744
CEN8	Chr8	44033745	45877265
30	Chr8	45877266	116325513
31	Chr8	116325514	122927768
32	Chr8	122927769	145078635
33	Chr9	10000	43236167
CEN9	Chr9	43236168	45518558
34	Chr9	45518559	138334716
35	Chr10	10000	39686682
CEN10	Chr10	39686683	41593521
36	Chr10	41593522	114848066
37	Chr10	114848067	123880243
38	Chr10	123880244	133787421
39	Chr11	60000	51078348
CEN11	Chr11	51078349	54425074
40	Chr11	54425075	135076621
41	Chr12	10000	34769407
CEN12	Chr12	34769408	37185252
42	Chr12	37185253	75578306
43	Chr12	75578307	81582326
44	Chr12	81582327	133265308
45	Chr13	16000000	16000000
CEN13	Chr13	16000001	18051248
46	Chr13	18051249	90883995
47	Chr13	90883996	96459287
48	Chr13	96459288	100552245
49	Chr13	100552246	104440557
50	Chr13	104440558	110466016
51	Chr13	110466017	114354327
52	Chr14	16000000	16000000
CEN14	Chr14	16000001	18173523
53	Chr14	18173524	106883717
54	Chr15	17000000	17000000
CEN15	Chr15	17000001	19725254
55	Chr15	19725255	101981188
56	Chr16	10000	36311158
CEN16	Chr16	36311159	38280682
57	Chr16	38280683	90228344
58	Chr17	60000	22813679
CEN17	Chr17	22813680	26885980
59	Chr17	26885981	83247440
60	Chr18	10000	15460899
CEN18	Chr18	15460900	20861206
61	Chr18	20861207	57250324
62	Chr18	57250325	63145152
63	Chr18	63145153	66761734
64	Chr18	66761735	74949147
65	Chr18	74949148	80263284
66	Chr19	60000	24498980
CEN19	Chr19	24498981	27190874
67	Chr19	27190875	58607615
68	Chr20	60000	26436232
CEN20	Chr20	26436233	30038348
69	Chr20	30038349	64334166
70	Chr21	5010000	10864560
CEN21	Chr21	10864561	12915808
71	Chr21	12915809	46699982
72	Chr22	10510000	12954788
CEN22	Chr22	12954789	15054318
73	Chr22	15054319	50808467
74	ChrX	10000	58605579
CENX	ChrX	58605580	62412542
75	ChrX	62412543	156030894
76	ChrY	10000	10316944
CENY	ChrY	10316945	10544039
77	ChrY	10544040	57217414
---
chromosome	KT	telo1_len	telo2_len
Chr1a	1+,CEN1+,2+,3-,4+	10000	10000
Chr1b	1+,CEN1+,2+,3+,4+	10000	10000
Chr2a	5+,12+,7+,9+,CEN2+,10+	10000	10000
Chr2b	5+,6+,7+,8+,9+,CEN2+,10+	10000	10000
Chr3a	11+,6+,13+,CEN3+,14+	10000	60000
Chr3b	11+,12+,13+,CEN3+,14+	10000	60000
Chr4a	15+,CEN4+,16+	10000	10000
Chr4b	15+,CEN4+,16+	10000	10000
Chr5a	17+,19+,CEN5+,20+,21+,21+,22+	10000	60000
Chr5b	17+,18+,19+,CEN5+,20+,21+,22+	10000	60000
Chr6a	23+,CEN6+,24+,25+,25+,26+	60000	60000
Chr6b	23+,CEN6+,24+,25+,26+	60000	60000
Chr7a	27+,CEN7+,28+	10000	10000
Chr7b	27+,CEN7+,28+	10000	10000
Chr8a	29+,CEN8+,30+,43+,32+	60000	60000
Chr8b	29+,CEN8+,30+,31+,32+	60000	60000
Chr9a	33+,CEN9+,34+	10000	60000
Chr9b	33+,CEN9+,34+	10000	60000
Chr10a	35+,CEN10+,36+,37-,37+,38+	10000	10000
Chr10b	35+,CEN10+,36+,37+,38+	10000	10000
Chr11a	39+,CEN11+,40+	60000	10000
Chr11b	39+,CEN11+,40+	60000	10000
Chr12a	41+,CEN12+,42+,31+,44+	10000	10000
Chr12b	41+,CEN12+,42+,43+,44+	10000	10000
Chr13a	45+,CEN13+,46+,47-,48+,49+,50+,51-,51+	16000000	10000
Chr13b	45+,CEN13+,46+,47+,48+,49+,50+,51+	16000000	10000
Chr14a	52+,CEN14+,53+	16000000	160000
Chr14b	52+,CEN14+,53+	16000000	160000
Chr15a	54+,CEN15+,55+	17000000	10000
Chr15b	54+,CEN15+,55+	17000000	10000
Chr16a	56+,CEN16+,57+	10000	110000
Chr16b	56+,CEN16+,57+	10000	110000
Chr17a	58+,CEN17+,59+	60000	10000
Chr17b	58+,CEN17+,59+	60000	10000
Chr18a	60+,CEN18+,61+,64+,62+,63+,65+	10000	110000
Chr18b	60+,CEN18+,61+,62+,63+,64+,65+	10000	110000
Chr19a	66+,CEN19+,67+	60000	10000
Chr19b	66+,CEN19+,67+	60000	10000
Chr20a	68+,CEN20+,69+	60000	110000
Chr20b	68+,CEN20+,69+	60000	110000
Chr21a	70+,CEN21+,71+	5010000	10000
Chr21b	70+,CEN21+,71+	5010000	10000
Chr22a	72+,CEN22+,73+	10510000	10000
Chr22b	72+,CEN22+,73+	10510000	10000
ChrXa	74+,CENX+,75+	10000	10000
ChrYa	76+,CENY+,77+	10000	10000
---
initialization
	autosomes: ['Chr1', 'Chr2', 'Chr3', 'Chr4', 'Chr5', 'Chr6', 'Chr7', 'Chr8', 'Chr9', 'Chr10', 'Chr11', 'Chr12', 'Chr13', 'Chr14', 'Chr15', 'Chr16', 'Chr17', 'Chr18', 'Chr19', 'Chr20', 'Chr21', 'Chr22']
	autosomal copy number: 1
	sex chromosomes: ['ChrY']
block 1: Cri_du_Chat
	deletion on segments [18+], from Chr5a to Chr5a
block 2: random events
	left duplication inversion on segments [37+], from Chr10a to Chr10a
	balanced reciprocal translocation on segments [43+], from Chr12a to Chr8a
	balanced reciprocal translocation on segments [31+], from Chr8a to Chr12a
	balanced reciprocal translocation on segments [12+], from Chr3a to Chr2a
	balanced reciprocal translocation on segments [6+], from Chr2a to Chr3a
	inversion on segments [47+], from Chr13a to Chr13a
	inversion on segments [3+], from Chr1a to Chr1a
	tandem duplication on segments [25+], from Chr6a to Chr6a
	deletion on segments [8+], from Chr2a to Chr2a
	balanced reciprocal translocation on segments [62+], from Chr18a to Chr18a
	balanced reciprocal translocation on segments [64+], from Chr18a to Chr18a
	tandem duplication on segments [21+], from Chr5a to Chr5a
	left duplication inversion on segments [51+], from Chr13a to Chr13a
