index	origin	start	end
1	Chr1	10000	14320920
2	Chr1	14320921	15557110
3	Chr1	15557111	76355015
4	Chr1	76355016	77372962
5	Chr1	77372963	122026459
CEN1	Chr1	122026460	125184587
6	Chr1	125184588	163398374
7	Chr1	163398375	164616296
8	Chr1	164616297	248946421
9	Chr2	10000	42729957
10	Chr2	42729958	44305185
11	Chr2	44305186	92188145
CEN2	Chr2	92188146	94090557
12	Chr2	94090558	173009993
13	Chr2	173009994	174838544
14	Chr2	174838545	242183528
15	Chr3	10000	84012371
16	Chr3	84012372	84795930
17	Chr3	84795931	90772458
CEN3	Chr3	90772459	93655574
18	Chr3	93655575	194512399
19	Chr3	194512400	195520210
20	Chr3	195520211	198235558
21	Chr4	10000	49708100
CEN4	Chr4	49708101	51743951
22	Chr4	51743952	91598613
23	Chr4	91598614	92358276
24	Chr4	92358277	190204554
25	Chr5	10000	23919626
26	Chr5	23919627	25169895
27	Chr5	25169896	46485900
CEN5	Chr5	46485901	50059807
28	Chr5	50059808	60184092
29	Chr5	60184093	60184093
30	Chr5	60184094	181478258
31	Chr6	60000	678166
32	Chr6	678167	804075
33	Chr6	804076	12446566
34	Chr6	12446567	13808809
35	Chr6	13808810	53663797
36	Chr6	53663798	54281964
37	Chr6	54281965	58553888
CEN6	Chr6	58553889	59829934
38	Chr6	59829935	170745978
39	Chr7	10000	58169653
CEN7	Chr7	58169654	60828234
40	Chr7	60828235	130347848
41	Chr7	130347849	131829830
42	Chr7	131829831	159335972
43	Chr8	60000	44033744
CEN8	Chr8	44033745	45877265
44	Chr8	45877266	145078635
45	Chr9	10000	43236167
CEN9	Chr9	43236168	45518558
46	Chr9	45518559	138334716
47	Chr10	10000	39686682
CEN10	Chr10	39686683	41593521
48	Chr10	41593522	56131636
49	Chr10	56131637	57979770
50	Chr10	57979771	131939288
51	Chr10	131939289	133787421
52	Chr11	60000	51078348
CEN11	Chr11	51078349	54425074
53	Chr11	54425075	86886512
54	Chr11	86886513	88768377
55	Chr11	88768378	135076621
56	Chr12	10000	34769407
CEN12	Chr12	34769408	37185252
57	Chr12	37185253	64678138
58	Chr12	64678139	68251745
59	Chr12	68251746	120080211
60	Chr12	120080212	121295087
61	Chr12	121295088	133265308
62	Chr13	16000000	16000000
CEN13	Chr13	16000001	18051248
63	Chr13	18051249	114354327
64	Chr14	16000000	16000000
CEN14	Chr14	16000001	18173523
65	Chr14	18173524	63343270
66	Chr14	63343271	64128160
67	Chr14	64128161	106883717
68	Chr15	17000000	17000000
CEN15	Chr15	17000001	19725254
69	Chr15	19725255	101981188
70	Chr16	10000	36311158
CEN16	Chr16	36311159	38280682
71	Chr16	38280683	90228344
72	Chr17	60000	22813679
CEN17	Chr17	22813680	26885980
73	Chr17	26885981	83247440
74	Chr18	10000	15460899
CEN18	Chr18	15460900	20861206
75	Chr18	20861207	23905169
76	Chr18	23905170	25675929
77	Chr18	25675930	80263284
78	Chr19	60000	24498980
CEN19	Chr19	24498981	27190874
79	Chr19	27190875	58607615
80	Chr20	60000	26436232
CEN20	Chr20	26436233	30038348
81	Chr20	30038349	64334166
82	Chr21	5010000	10864560
CEN21	Chr21	10864561	12915808
83	Chr21	12915809	46699982
84	Chr22	10510000	12954788
CEN22	Chr22	12954789	15054318
85	Chr22	15054319	28073206
86	Chr22	28073207	29075880
87	Chr22	29075881	50808467
88	ChrX	10000	58605579
CENX	ChrX	58605580	62412542
89	ChrX	62412543	156030894
90	ChrY	10000	10316944
CENY	ChrY	10316945	10544039
91	ChrY	10544040	57217414
---
chromosome	KT	telo1_len	telo2_len
Chr1a	1+,10+,3+,60+,5+,CEN1+,6+,7+,7+,8+	10000	10000
Chr1b	1+,2+,3+,4+,5+,CEN1+,6+,7+,8+	10000	10000
Chr2a	9+,2+,11+,CEN2+,12+,13-,14+	10000	10000
Chr2b	9+,10+,11+,CEN2+,12+,13+,14+	10000	10000
Chr3a	15+,16-,16+,17+,CEN3+,18+,66+,20+	10000	60000
Chr3b	15+,16+,17+,CEN3+,18+,19+,20+	10000	60000
Chr4a	21+,CEN4+,22+,23-,23+,24+	10000	10000
Chr4b	21+,CEN4+,22+,23+,24+	10000	10000
Chr5a	25+,26-,26+,27+,CEN5+,28+,41+,29+,30+	10000	60000
Chr5b	25+,26+,27+,CEN5+,28+,29+,30+	10000	60000
Chr6a	32-,31+,31-,33+,34+,35+,36+,37+,CEN6+,38+	60000	60000
Chr6b	31+,32+,33+,34+,35+,36+,37+,CEN6+,38+	60000	60000
Chr7a	39+,CEN7+,40+,42+	10000	10000
Chr7b	39+,CEN7+,40+,41+,42+	10000	10000
Chr8a	43+,CEN8+,44+	60000	60000
Chr8b	43+,CEN8+,44+	60000	60000
Chr9a	45+,CEN9+,46+	10000	60000
Chr9b	45+,CEN9+,46+	10000	60000
Chr10a	47+,CEN10+,48+,49+,50+,51-	10000	10000
Chr10b	47+,CEN10+,48+,49+,50+,51+	10000	10000
Chr11a	52+,CEN11+,53+,54+,54+,55+	60000	10000
Chr11b	52+,CEN11+,53+,54+,55+	60000	10000
Chr12a	56+,CEN12+,57+,59+,4+,61+	10000	10000
Chr12b	56+,CEN12+,57+,58+,59+,60+,61+	10000	10000
Chr13a	62+,CEN13+,63+	16000000	10000
Chr13b	62+,CEN13+,63+	16000000	10000
Chr14a	64+,CEN14+,65+,19+,67+	16000000	160000
Chr14b	64+,CEN14+,65+,66+,67+	16000000	160000
Chr15a	68+,CEN15+,69+	17000000	10000
Chr15b	68+,CEN15+,69+	17000000	10000
Chr16a	70+,CEN16+,71+	10000	110000
Chr16b	70+,CEN16+,71+	10000	110000
Chr17a	72+,CEN17+,73+	60000	10000
Chr17b	72+,CEN17+,73+	60000	10000
Chr18a	74+,CEN18+,75+,76-,76+,77+	10000	110000
Chr18b	74+,CEN18+,75+,76+,77+	10000	110000
Chr19a	78+,CEN19+,79+	60000	10000
Chr19b	78+,CEN19+,79+	60000	10000
Chr20a	80+,CEN20+,81+	60000	110000
Chr20b	80+,CEN20+,81+	60000	110000
Chr21a	82+,CEN21+,83+	5010000	10000
Chr21b	82+,CEN21+,83+	5010000	10000
Chr22a	84+,CEN22+,85+,86-,87+	10510000	10000
Chr22b	84+,CEN22+,85+,86+,87+	10510000	10000
ChrXa	88+,CENX+,89+	10000	10000
ChrYa	90+,CENY+,91+	10000	10000
---
initialization
	autosomes: ['Chr1', 'Chr2', 'Chr3', 'Chr4', 'Chr5', 'Chr6', 'Chr7', 'Chr8', 'Chr9', 'Chr10', 'Chr11', 'Chr12', 'Chr13', 'Chr14', 'Chr15', 'Chr16', 'Chr17', 'Chr18', 'Chr19', 'Chr20', 'Chr21', 'Chr22']
	autosomal copy number: 1
	sex chromosomes: ['ChrY']
block 1: 12q14_recurrent_microdeletion
	deletion on segments [58+], from Chr12a to Chr12a
block 2: random events
	tandem duplication on segments [54+], from Chr11a to Chr11a
	left duplication inversion on segments [76+], from Chr18a to Chr18a
	nonreciprocal translocation on segments [41+], from Chr7a to Chr5a
	inversion on segments [13+], from Chr2a to Chr2a
	balanced reciprocal translocation on segments [10+], from Chr2a to Chr1a
	balanced reciprocal translocation on segments [2+], from Chr1a to Chr2a
	tandem duplication on segments [7+], from Chr1a to Chr1a
	inversion on segments [51+], from Chr10a to Chr10a
	inversion on segments [86+], from Chr22a to Chr22a
	balanced reciprocal translocation on segments [19+], from Chr3a to Chr14a
	balanced reciprocal translocation on segments [66+], from Chr14a to Chr3a
	right duplication inversion on segments [31+], from Chr6a to Chr6a
	left duplication inversion on segments [26+], from Chr5a to Chr5a
	left duplication inversion on segments [16+], from Chr3a to Chr3a
	inversion on segments [31+,31+,32+], from Chr6a to Chr6a
	balanced reciprocal translocation on segments [60+], from Chr12a to Chr1a
	balanced reciprocal translocation on segments [4+], from Chr1a to Chr12a
	left duplication inversion on segments [23+], from Chr4a to Chr4a
