The following folder/notebook are for the generation of the plots in the OMKar Manuscript:

- data/: all necessary data needed for generating the figures
- 3d_barplot_<realdata/simulations>.ipynb: Main Fig. 2 in the results section
- SV_size_distribution.ipynb: Supplementary Figure for SV Size and Type distribution
- KarCheck_distance_analyses.ipynb: Supplementary Figure for matched Edge distance analyses (True edge in/not in SMAP)
- Runtime_analyses.ipynb: Supplementary Figure for runtime
- Validations_against_SOC: Supplementary Figure of OMKar and SOC concordance