# CNV pipeline calls
# Version: 3ba3c0ad741221ae39d5203b0fc304f2cc1dd599; installed on 2021-10-11 23:53:37
#Id	Chromosome	Start	End	Width	Type	fractionalCopyNumber	CopyNumber	Confidence	AlleleFreq	Mask_overlap_fract	Algorithm
1	1	14453	3781897	3767445	loss_masked	1.19644115975499	1	0	0.401779420122506	0.940482990589907	Region-based
2	1	120635016	120934059	299044	loss_masked	0.0906394817996203	0	0	0.95468025910019	1	Region-based
3	1	120936026	121608073	672048	gain	2.1840414994521	2	0	0.0920207497260501	0.168175737708821	Region-based
4	1	121734676	124168495	2433820	loss_masked	0	0	0	1	1	Region-based
5	1	124779769	125145640	365872	loss_masked	0.181278963599241	0	0	0.90936051820038	1	Region-based
6	1	143278152	144410176	1132025	loss_masked	1.32151285100287	1	0	0.339243574498567	0.870127311788443	Region-based
7	1	144416847	145229162	812316	gain	2.23844241805088	2	0	0.119221209025439	0.304152758380211	Region-based
8	1	145230161	145454718	224558	loss_masked	1.10580167795537	1	0	0.447099161022316	0.806895353963582	Region-based
9	1	174546026	175653981	1107956	loss	1.78040142491549	2	0	0.109799287542253	0	Region-based
10	2	90230855	91703028	1472174	loss_masked	1.53180724241358	2	0	0.234096378793208	0.896562428464589	Region-based
11	2	91703852	92093328	389477	gain_masked	2.27035238512897	2	0	0.135176192564483	0.489619386046894	Region-based
12	2	92426711	93877125	1450415	loss_masked	0.0362557927198481	0	0	0.981872103640076	1	Region-based
13	2	116424806	116732817	308012	gain	2.38721390809633	2	0	0.193606954048163	0	Region-based
14	2	157848278	162368759	4520482	gain	2.146866991132	2	0	0.0734334955659999	0	Region-based
15	2	178043170	221204993	43161824	gain	3.04752092115898	3	1	0.523760460579491	0	Region-based
16	2	238593639	240728505	2134867	loss	1.71337518485338	2	0	0.143312407573308	0.399917371863152	Region-based
17	2	240738183	241012766	274584	loss_masked	0.661668217137228	1	0	0.669165891431386	1	Region-based
18	2	241020261	242181357	1161097	loss_masked	1.74068934712355	2	0	0.129655326438223	0.557834149803289	Region-based
19	3	90626451	91532638	906188	loss_masked	1.57712698331339	2	0	0.211436508343303	1	Region-based
20	3	98150636	98880440	729805	loss	1.6746196147565	2	0	0.162690192621751	0	Region-based
21	3	128330488	128753547	423060	loss	1.46171476073444	1	0.626732961041462	0.269142619632782	0	Region-based
22	3	166048991	168382430	2333440	loss	1.79246391546985	2	0	0.103768042265077	0	Region-based
23	4	12985	671583	658599	loss_masked	1.66278247535434	2	0	0.168608762322828	0.759188457906037	Region-based
24	4	677968	1044278	366311	loss_masked	1.01516219615575	1	0	0.492418901922126	0.906603696322787	Region-based
25	4	1064126	3416756	2352631	loss	1.85255231091101	2	0	0.0737238445444927	0.236673850116678	Region-based
26	4	3421005	3878184	457180	loss_masked	0.725115854396962	1	0	0.637442072801519	1	Region-based
27	4	92500656	92895337	394682	loss	1.60801154748215	2	0	0.195994226258924	0	Region-based
28	4	189975572	190202564	226993	loss_masked	0.725115854396962	1	0	0.637442072801519	1	Region-based
29	5	19314	288115	268802	loss_masked	1.22222056778432	1	0	0.388889716107841	1	Region-based
30	5	46197554	46400789	203236	loss_masked	0.416941616278253	0	0	0.791529191860873	1	Region-based
31	5	46421476	49668515	3247040	loss_masked	0	0	0	1	0.977521366389501	Region-based
32	5	49709239	50306568	597330	loss_masked	0.706987958037038	1	0	0.646506020981481	1	Region-based
33	5	180937832	181472714	534883	loss_masked	1.83091753235233	2	0	0.0845412338238349	1	Region-based
34	6	29021439	31281400	2259962	loss	1.80210937389106	2	0	0.0989453130544686	0	Region-based
35	6	31287406	31489800	202395	loss_masked	0.652604268957266	1	0	0.673697865521367	0.891711216735674	Region-based
36	6	31497254	33526609	2029356	loss	1.83730752165329	2	0	0.0813462391733555	0.166199358909604	Region-based
37	6	33529509	33997927	468419	loss	1.34715902461327	1	0.598530928731044	0.326420487693366	0	Region-based
38	6	59282244	60284176	1001933	loss_masked	1.19644115975499	1	0	0.401779420122506	1	Region-based
39	6	169999747	170250471	250725	loss_masked	0.507581098077874	1	0	0.746209450961063	1	Region-based
40	7	10487	618481	607995	loss_masked	0.725115854396962	1	0	0.637442072801519	1	Region-based
41	7	659803	2109284	1449482	loss_masked	1.39584801971415	1	0	0.302075990142924	0.876081162843804	Region-based
42	7	58079155	60650992	2571838	loss_masked	0	0	0	1	1	Region-based
43	7	60735965	61522678	786714	loss_masked	1.17831326339506	1	0	0.410843368302468	1	Region-based
44	7	61525412	61843596	318185	loss_masked	0.471325305358026	0	0	0.764337347320987	1	Region-based
45	7	61875656	62962817	1087162	loss_masked	0.67073216531719	1	0	0.664633917341405	1	Region-based
46	7	75188041	75390671	202631	loss_masked	0.598220579877494	1	0	0.700889710061253	1	Region-based
47	8	7416204	8139550	723347	loss_masked	1.0514179888756	1	0	0.474291005562202	1	Region-based
48	8	10283455	12314663	2031209	loss	1.81015269821614	2	0	0.0949236508919318	0.152409797519506	Region-based
49	8	45196763	45196763	1	loss	0	0	0	1	0	Region-based
50	8	141261497	145076125	3814629	loss_masked	1.52274329423362	2	0	0.238628352883189	0.848593100034918	Region-based
51	9	43289106	60867228	17578123	loss_masked	0.0362557927198481	0	0	0.981872103640076	1	Region-based
52	9	60888426	61229092	340667	loss_masked	0.299110289938747	0	0	0.850444855030627	1	Region-based
53	9	61285530	62144828	859299	loss_masked	1.32333643427446	1	0	0.338331782862772	1	Region-based
54	9	62146780	62954529	807750	loss_masked	1.21456905611491	1	0	0.392715471942544	1	Region-based
55	9	63014728	63486902	472175	loss_masked	0.725115854396962	1	0	0.637442072801519	1	Region-based
56	9	63490126	64134668	644543	loss_masked	1.26895274519468	1	0	0.365523627402658	0.640698077625723	Region-based
57	9	64186126	64960054	773929	loss_masked	1.48648750151377	1	0	0.256756249243113	1	Region-based
58	9	65066131	65321101	254971	loss_masked	0.308174238118709	0	0.990116086728052	0.845912880940646	1	Region-based
59	9	65322076	68298843	2976768	loss_masked	1.72898655518699	2	0	0.135506722406505	0.877869178205751	Region-based
60	9	133294037	135896185	2602149	loss_masked	1.62255223337038	2	0	0.188723883314812	0.656934194365578	Region-based
61	9	135911971	136047827	135857	loss_masked	0.725115854396962	1	0	0.637442072801519	1	Region-based
62	9	136121158	136923282	802125	loss_masked	1.19644115975499	1	0	0.401779420122506	0.862886536246266	Region-based
63	9	136928032	137528312	600281	loss_masked	0.253790549038937	0	0	0.873104725480532	1	Region-based
64	9	137548972	138334464	785493	loss_masked	1.73528418303484	2	0	0.132357908482582	0.794055190886731	Region-based
65	10	18514	535540	517027	loss_masked	1.70748754487234	2	0	0.14625622756383	0.967069354345816	Region-based
66	10	11197372	12469915	1272544	loss	1.72984292111186	2	0	0.135078539444071	0	Region-based
67	10	39210645	39512270	301626	loss_masked	0.543836890797722	1	0	0.728081554601139	1	Region-based
68	10	39557812	39607821	50010	loss_masked	0	0	0	1	1	Region-based
69	10	132729832	133345911	616080	loss_masked	0.344430030838557	0	0	0.827784984580721	1	Region-based
70	11	60457	272297	211841	loss_masked	1.66776646511301	2	0	0.166116767443493	1	Region-based
71	11	276232	650463	374232	loss_masked	0.326302134478633	0	0	0.836848932760683	1	Region-based
72	11	657204	1416223	759020	loss_masked	1.28708064155461	1	0	0.356459679222696	0.775132111317371	Region-based
73	11	1420875	1672208	251334	loss_masked	0.154087119059355	0	0	0.922956440470323	1	Region-based
74	11	1673394	2530605	857212	loss_masked	0.897330869816241	1	0	0.55133456509188	0.969589750948133	Region-based
75	11	41422702	41730969	308268	loss	1.4574925125886	1	0.709815417247569	0.271253743705701	0	Region-based
76	11	47992648	48687256	694609	gain	2.31549846522906	2	0	0.157749232614532	0.0955071061663557	Region-based
77	11	51099660	53138954	2039295	loss_masked	0	0	0	1	1	Region-based
78	11	68514230	69282853	768624	loss_masked	1.53043757360242	2	0	0.23478121319879	0.531587962116693	Region-based
79	11	117419797	118396223	976427	loss	1.69231663361951	2	0	0.153841683190247	0	Region-based
80	11	134309117	135069565	760449	loss_masked	1.5841424466751	2	0	0.207928776662449	0.635076954637266	Region-based
81	12	9410188	9614578	204391	loss_masked	0.67073216531719	1	0	0.664633917341405	1	Region-based
82	12	34834648	37251363	2416716	loss_masked	0	0	0	1	1	Region-based
83	12	95623552	95812734	189183	gain	2.66084644604316	3	0.385665603159597	0.33042322302158	0	Region-based
84	12	132099235	133263960	1164726	loss_masked	1.55611094184929	2	0	0.221944529075353	1	Region-based
85	13	16004725	17418138	1413414	loss_masked	0.0362557927198481	0	0	0.981872103640076	1	Region-based
86	13	113070938	113534451	463514	loss_masked	0.997034299795823	1	0	0.501482850102088	0.89394256471771	Region-based
87	13	113544781	114148963	604183	loss_masked	0.435069512638177	0	0	0.782465243680911	1	Region-based
88	13	114160615	114352102	191488	loss_masked	1.65085990317855	2	0	0.174570048410725	1	Region-based
89	14	16004725	17540412	1535688	loss_masked	0	0	0	1	1	Region-based
90	14	104616666	104857018	240353	loss_masked	0.833883232556507	1	0	0.583058383721747	1	Region-based
91	14	105102743	105725304	622562	loss_masked	1.06954588523552	1	0	0.46522705738224	1	Region-based
92	14	106352992	106873282	520291	loss_masked	1.52274329423362	2	0	0.238628352883189	1	Region-based
93	15	17050953	18979695	1928743	loss_masked	0.0181278963599241	0	0	0.990936051820038	1	Region-based
94	15	19024883	20911527	1886645	gain_masked	2.15160902759141	2	0	0.0758045137957026	0.945437507023053	Region-based
95	15	20913645	21184534	270890	loss_masked	0.0219821416788131	0	0	0.989008929160593	1	Region-based
96	15	30109229	30547917	438689	gain_masked	2.88520152801253	3	0.947253262403039	0.442600764006263	0.702234845721789	Region-based
97	16	14134	356438	342305	loss_masked	1.41879987196947	1	0	0.290600064015265	1	Region-based
98	16	364998	875506	510509	loss_masked	0.217534756319089	0	0	0.891232621840456	1	Region-based
99	16	887824	2168443	1280620	loss_masked	1.28708064155461	1	0	0.356459679222696	0.914581151771136	Region-based
100	16	32318954	32964090	645137	gain_masked	3.17238186298671	3	0	0.586190931493355	1	Region-based
101	16	32986680	33481950	495271	loss_masked	0.779499543476735	1	0	0.610250228261633	1	Region-based
102	16	33487659	34245308	757650	gain_masked	3.28114924114626	3	0	0.640574620573128	1	Region-based
103	16	34343022	36224642	1881621	loss_masked	1.7152694303068	2	0	0.1423652848466	0.629332171214167	Region-based
104	16	37228979	37228979	1	loss	0.0543836890797722	0	0	0.972808155460114	0	Region-based
105	16	85069838	85492676	422839	loss_masked	0.688860061677114	1	0	0.655569969161443	0.893278276786855	Region-based
106	16	89511613	90224751	713139	loss_masked	1.39889547202501	1	0	0.300552263987494	1	Region-based
107	17	66653	9903718	9837066	loss	1.84642895350099	2	0	0.0767855232495031	0.114087281114845	Region-based
108	17	18314562	22732567	4418006	loss	1.8476890309004	2	0	0.0761554845498018	0.228639849886997	Region-based
109	17	25919736	26677670	757935	loss_masked	0.0725115854396962	0	0	0.963744207280152	1	Region-based
110	17	34634556	35348025	713470	loss	1.6018267863761	2	0.736813127454422	0.199086606811951	0	Region-based
111	17	37901274	38098722	197449	loss_masked	0.48945320171795	0	0	0.755273399141025	1	Region-based
112	17	46266180	46521313	255134	loss_masked	0.0543836890797722	0	0	0.972808155460114	1	Region-based
113	17	78192672	78421870	229199	loss_masked	0.761371647116811	1	0	0.619314176441595	1	Region-based
114	17	78449058	82964317	4515260	loss	1.78843194021822	2	0	0.10578402989089	0.392944679363908	Region-based
115	17	82981288	83246392	265105	loss_masked	0.955891856752865	1	0	0.522054071623567	1	Region-based
116	18	15486705	20576802	5090098	loss_masked	0	0	0	1	1	Region-based
117	18	70890138	71130922	240785	gain	2.53081745378372	3	0.170774462534287	0.26540872689186	0	Region-based
118	19	61294	4142410	4081117	loss_masked	1.56787172681565	2	0	0.216064136592174	0.780399773003267	Region-based
119	19	4147003	24420459	20273457	loss	1.84176560543154	2	0	0.0791171972842298	0.131234186218669	Region-based
120	19	24499964	26573937	2073974	loss_masked	0	0	0	1	1	Region-based
121	19	27185211	27516938	331728	loss_masked	0.253790549038937	0	0	0.873104725480532	1	Region-based
122	19	42401725	43020903	619179	loss	1.37641030425308	1	0.825705633177929	0.311794847873461	0	Region-based
123	19	43041918	58605715	15563798	loss	1.84550959494552	2	0	0.0772452025272379	0.167666990259511	Region-based
124	20	70156	1239814	1169659	loss	1.70537400859971	2	0	0.147312995700146	0.427475381692768	Region-based
125	20	28431824	28637427	205604	loss_masked	0.48945320171795	0	0	0.755273399141025	1	Region-based
126	20	28646356	28827600	181245	loss_masked	0.0906394817996203	0	0	0.95468025910019	1	Region-based
127	20	28874356	29888492	1014137	loss_masked	1.11120428499634	1	0	0.444397857501828	0.768274176244606	Region-based
128	20	29902660	30989588	1086929	loss_masked	1.54087119059355	2	0	0.229564404703227	0.610115849439889	Region-based
129	20	61800646	64333718	2533073	loss_masked	1.02422614433571	1	0	0.487886927832145	0.853567920690766	Region-based
130	21	5010514	5445037	434524	loss_masked	0.0181278963599241	0	0	0.990936051820038	1	Region-based
131	21	5446053	5867184	421132	gain_masked	2.88233552122793	3	0	0.441167760613963	1	Region-based
132	21	5872447	6150896	278450	loss_masked	0.0362557927198481	0	0	0.981872103640076	1	Region-based
133	21	6155925	6499788	343864	gain_masked	4.71325305358026	5	0	1.35662652679013	1	Region-based
134	21	6503790	6921188	417399	loss_masked	0.253790549038937	0	0	0.873104725480532	1	Region-based
135	21	6930267	7144161	213895	loss_masked	1.11486562613533	1	0	0.442567186932335	1	Region-based
136	21	7225221	7488429	263209	loss_masked	0.0181278963599241	0	0	0.990936051820038	1	Region-based
137	21	7496836	7684757	187922	loss_masked	1.35052827881434	1	0	0.324735860592829	1	Region-based
138	21	7744575	10886202	3141628	gain_masked	2.95484710666762	3	0	0.477423553333811	1	Region-based
139	21	11000793	12282698	1281906	loss_masked	0.0362557927198481	0	0	0.981872103640076	1	Region-based
140	21	15945761	16492472	546712	loss	1.58194704598189	2	0	0.209026477009055	0	Region-based
141	21	45261409	45539797	278389	loss_masked	0.616348476237418	1	0	0.691825761881291	1	Region-based
142	21	45547465	46697230	1149766	loss_masked	1.77730361883302	2	0	0.111348190583488	0.804834031302049	Region-based
143	22	10514803	10784271	269469	gain_masked	3.02735869210732	3	0	0.513679346053659	1	Region-based
144	22	10835146	11153953	318808	loss_masked	0	0	0	1	1	Region-based
145	22	11157851	11370078	212228	gain_masked	2.3276676727713	2	0	0.163833836385648	1	Region-based
146	22	11428933	11717594	288662	loss_masked	0.108767378159544	0	0	0.945616310920228	1	Region-based
147	22	11720103	12225163	505061	loss_masked	1.50143417929243	2	0	0.249282910353785	1	Region-based
148	22	12279864	12641252	361389	gain_masked	2.48123666948667	2	0	0.240618334743335	1	Region-based
149	22	12695958	14421208	1725251	loss_masked	0	0	0	1	1	Region-based
150	22	14545087	18189402	3644316	loss_masked	1.8239347473642	2	0	0.0880326263179001	0.547238095499428	Region-based
151	22	18344168	18876658	532491	loss_masked	0.823927587852894	1	0	0.588036206073553	1	Region-based
152	22	21070312	21490972	420661	loss_masked	1.31950040836637	1	0	0.340249795816816	0.894779632006846	Region-based
153	22	48444310	49068576	624267	loss_masked	1.08968885014312	1	0	0.455155574928441	1	Region-based
154	22	49072574	50805587	1733014	loss_masked	1.68922037096203	2	0	0.155389814518985	0.752404050056174	Region-based
155	23	11554	24178	12625	loss_masked	0	0	0	1	1	Region-based
156	23	223951	2391642	2167692	loss_masked	0.694693903662862	1	0	0.305306096337138	1	Region-based
157	23	2398562	2753060	354499	gain_masked	1.75840594691263	2	0	0.758405946912634	1	Region-based
158	23	28129260	29067420	938161	loss	0.750373501196542	1	0.833066810230965	0.249626498803458	0	Region-based
159	23	58805082	62485154	3680073	loss_masked	0	0	0	1	1	Region-based
160	23	77280112	77730601	450490	gain	1.31433607179978	1	0.636495998410998	0.314336071799781	0	Region-based
161	24	11554	2464217	2452664	loss_masked	0	0	0	1	0.69106803502968	Region-based
162	24	2465162	2683494	218333	loss_masked	0.0362557927198481	0	0	0.963744207280152	1	Region-based
163	24	3751317	4417756	666440	loss_masked	0.753960812586155	1	0.061581383624295	0.246039187413845	1	Region-based
164	24	9332604	10240046	907443	loss_masked	0.863059101071327	1	0	0.136940898928673	1	Region-based
165	24	20086154	20306326	220173	loss_masked	0.0362557927198481	0	0	0.963744207280152	1	Region-based
166	24	20308444	56944754	36636311	loss_masked	0.892075084037069	1	0	0.107924915962931	0.997357948985583	Region-based
