### Scripts for reproducing plots for `devider`.

* `conda_env.yaml` is the conda environment used for benchmarking.
* `pip_requirements.txt` is the python packages used for benhcmarking.

#### Fig. 2

```sh
cd hiv_snaketest
ls scripts/

### Fig. 2A for example
python scripts/accuracy_benchmarking.py
```

#### Fig. 4
```sh
cd amr_snaketest
ls scripts/

### Fig. 3A for example
python scripts/amr_accuracy_benchmarking.py
```

#### Fig. 5

```sh

### mussel results
cd mussels
python get_haps.py

### hiv results
cd hiv
ls pipe-hiv-1010

### AMR results
ls cfxa2-10-10
ls tetq-10-10
ls *GARD*
