Assignments LCA cutoff: LCA minimum abundance cutoff:
Rank: Taxonomic rank:
All Levels
Abundance:
Sample ID
Barcode
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Pipeline
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Engine version
-

###### Reads

Basecalled reads

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Database

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Classified reads

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Unclassified reads

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Basecalled yield

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Classified yield

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### These reads are being analysed...

Plots will appear after the first chunk of reads has been analysed.

###### Taxa Table

###### Donut

Show top N taxa

###### Tree

Showing top N of N leaves

###### Treemap

Showing top N of N nodes

###### Sankey

Showing top 25 of 0 leaves

###### Taxa accumulation - All levels

When LCA minimum abundance cutoff is not 0%, curve may go down as well as up

### Data Not Available

#### Please run accumulation analysis to see this plot

###### AMR Table

Chunk 1/1 1 Jan 2020
Toggle column:
Putative host taxa
Putative plasmid hits
Description
Resistance mechanism
Gene family
Drug class

###### Putative Host Taxa Analysis

Chunk 1/1 1 Jan 2020
Plot taxa by
Show top N
AMR Gene
Drug Class
Resistance mechanism

###### AMR hits

Chunk 1/1 1 Jan 2020
Plot hits by
Show top N
Show hits to

#### Click to add chart

##### Accumulation

Taxa accumulation plot.

##### AMR Table

Antimicrobial resistance analysis table.

##### Putative Host Analysis

Donut plot of taxa identified via AMR walkout analysis.

##### AMR Hits

Donut plot of AMR hits.

##### AMR gene information

Name:
  name
Accession:
  accession
Short name:
  short name

Description:
  description

Gene family:
  n/a
Drug class:
  n/a
Resistance mechanism:
  n/a
URL:
  url