.. toctree::
   :maxdepth: 4
   :caption: Start here

   intro

.. toctree::
   :maxdepth: 4
   :caption: Installation

   installation
   installationbyhand
   installationbioconda
   jobschedulers
   blastdbs

.. toctree::
   :maxdepth: 4
   :caption: Using MARTi

   running
   cmdline
   gui
   configfiles
   continuing
   advanced
   downstream
   example
   history

.. toctree::
   :maxdepth: 4
   :caption: Troubleshooting

   engineproblems
   guiproblems
   faqs
