Prerequisite: survivor 1.0.7

## Step 1: Call somatic SV
You may use command below to call somatic SVs.

The `Normal_vcf_list` and `Tumor_vcf_list` include the VCF files for HCC1395 normal and tumor data. They can be found at "HCC1395_TRA_INV_DUP_VCFs". You may edit the VCF path in `Normal_vcf_list` and `Tumor_vcf_list` before you run the command.

```
python3 run_suvivor.py \
--normalvcf Normal_vcf_list \
--cancervcf Tumor_vcf_list \
--output_dir survivor_output \
--survivor_dir <survivor_install_path> \
--pass_only
```

## Step 2: Evaluation

```
python3 eval_real_data_mt.py \
-i survivor_output
```
The evaluation result will be under `survivor_output`.


