Prerequisite: truvari 4.0.0, BEDTools 2.28.0

You may download reference hg19 v2.1.0 from here. 
```wget https://cf.10xgenomics.com/supp/genome/refdata-hg19-2.1.0.tar.gz
tar -xzvf refdata-hg19-2.1.0.tar.gz
```

Edit and run below command to reproduce paper result.
<reference> is the HG19 reference you dowload. 
<bench_dir> is `HG002_Giab_Benchmark` on zenodo. 
<vcf_dir> is `HG002_LargeINDEL_VCFs` on zenodo.

```
sh intersect_bed.sh <bench_dir>
sh run_eval.sh <vcf_dir> <reference> <bench_dir>
```
