[submodule "thirdparty/sdsl-lite"]
	path = thirdparty/sdsl-lite
	url = https://github.com/simongog/sdsl-lite.git
[submodule "thirdparty/htslib"]
	path = thirdparty/htslib
	url = https://github.com/samtools/htslib
[submodule "thirdparty/pfp"]
	path = thirdparty/pfp
	url = https://github.com/rvarki/pfp
[submodule "thirdparty/bigrepair"]
	path = thirdparty/bigrepair
	url = https://gitlab.com/maxrossi91/bigrepair.git
[submodule "thirdparty/pfp-thresholds"]
	path = thirdparty/pfp-thresholds
	url = https://github.com/rvarki/pfp-thresholds.git
[submodule "thirdparty/Big-BWT"]
	path = thirdparty/Big-BWT
	url = https://github.com/alshai/Big-BWT.git
[submodule "thirdparty/malloc_count"]
	path = thirdparty/malloc_count
	url = https://github.com/bingmann/malloc_count
[submodule "thirdparty/klib"]
	path = thirdparty/klib
	url = https://github.com/attractivechaos/klib
[submodule "thirdparty/r-index"]
	path = thirdparty/r-index
	url = https://github.com/rvarki/r-index.git
[submodule "thirdparty/ShapedSlp"]
	path = thirdparty/ShapedSlp
	url = https://github.com/rvarki/ShapedSlp.git
[submodule "thirdparty/Complete-Striped-Smith-Waterman-Library"]
	path = thirdparty/Complete-Striped-Smith-Waterman-Library
	url = https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
[submodule "thirdparty/ksw2"]
	path = thirdparty/ksw2
	url = https://github.com/lh3/ksw2
[submodule "thirdparty/levioSAM"]
	path = thirdparty/levioSAM
	url = https://github.com/maxrossi91/levioSAM.git
[submodule "thirdparty/backward-cpp"]
	path = thirdparty/backward-cpp
	url = https://github.com/bombela/backward-cpp.git
[submodule "thirdparty/Catch2"]
	path = thirdparty/Catch2
	url = https://github.com/catchorg/Catch2.git
