8/7/24 DL
Updated: 12/10/24 DL

Scripts to get basic information on TGIF-DB boundaries
and TGIF-DC annotated compartments in H1-endoderm data

db_output/
dc_output/
	output files from TGIF-DB and TGIF-DC 

annotated/
	TGIF-DC clusters annotated as A/B compartments

count_sig_db.py
	script to get # of sigDB in H1-endoderm data
	output: count_sig_db.txt

get_jaccard_index.py
	script to get similarity of boundary sets between
	H1 and endoderm
	output: jaccard_index.txt

figure_sankey.py
	script to visualize changes in compartment patterns 
	output: sankey_h1_endoderm.pdf

figure_upset.py
	script to visualize number of boundaries
	output: upset_h1_endoderm.pdf

figure_upset_before_summit_filter.py
	script to visualize number of summit AND non-summit boundaires
	output: update_h1_endoderm_before_summit_filter.pdf
