8/7/24 DL

Scripts to measure GC content in annotated AB compartments
from cardiomyocyte data 

1_get_all_regions.sh
	script to collect all 100kb regions
	input: bed/
	output: all_regions.bed

2_get_nucleotide_profile.sh
	script to get GC% in each 100kb region
	input: hg19.fa, hg19.fa.fai
	output: nucleotide_profile.txt

3_plot_gc_percentage.py
	script to visualize GC%

bed/
	bed files of 100kb regions

annotated/
	TGIF-DC clusters annotated as compartments

figures/
	output from script #3
