8/10 DL

Scripts to annotate TGIF-DC clusters as A/B compartments
using accessibility signal

1_get_mean_atac_per_cluster.py
	script to get the mean accessiblity signal for each
	TGIF-DC cluster

2_annotate_cluster.py
	script to annotate the cluster with higher accessibility
	signal as A compartment and the other as B

3_get_mean_atac_per_compartment.py
	script to calculate the mean accessibility for eaach
	compartment

4A_make_heatmaps.py
4B_make_boxplots.py
4C_make_boxplots_h3k27ac.py
	scripts to visualize mean accessibility signals per
	chrom/cluster or compartment and to visualize the 
	distribution of ATACseq and H3k27ac ChIPseq signal

atacseq/
	accessibility signal per 100kb bin

h3k27ac/
	h3k27ac signal per 100kb bin

bed/
	bed files for 100kb bin coordinates

tgif_output/
	TGIF-DC output

mean_atac_per_cluster/
	output of script 1

annotated/
	output of script 2	

mean_atac_per_compartment/
	output of script 3

figures/
	output of scripts 4A-C
