8/12/24 DL

Scripts to get the correlation between input matrix
similarity (SCC) and output boundary set (Jaccard)

1A_get_scc.py
scc_by_chrom.txt
	script to get input matrix similarity
	& output file

1B_get_boundary_jaccard.py
boundary_jaccard.txt
	script to get output boundary set similarity
	& output file

2A_get_correlation_bt_scc_and_jaccard.py
correlation_bt_scc_and_jaccard.txt
	script to get correlation between SCC and jaccard
	& output file
	
2B_scatterplot_scc_vs_jaccard.py
scc_vs_jaccard.pdf
	script to visualize SCC vs Jaccard as scatter plot
	& output file

3_plot_correlation.py
pearson.pdf
	script to plot the correlation by alpha
	& the output file

hicrep/
	hicrep code imported to get SCC

input/
	HiC matrices used to calculcate SCC

scan_alpha/
	TGIF-DB output files
