8/12/24 DL

Scripts to generate input files for visualization scripts

concat_bed.sh
all_regions.bed
	script to generate a list of all 10kb bins and its
	output file

update.sh
	wrapper script to run the programs to generate the
	input files

get_config.py
config/
	script to generate ini files that lists input files
	to the visualization script & the directory with 
	the ini files

get_score.py
scores/
	script to get the boundary scores in the neighborhood
	of a region of interest & the output vector files

get_submatrix.py
submatrix/
	script to get the HiC submatrix in the neighborhood
	of a region of interest & the output matrix files

get_summit.py
summit/
	script to get the binarized significant boundary
	status in the neighborhood of a region of interest 
	& the output vector files

hic/
	HiC matrices used to generate submatrices

tgif_output/
	TGIF-DC output files
