8/12/24 DL

Scripts to get top GO terms enriched in DE genes within 100kb
of sigDB in h1-endoderm data

0_make_preliminary_files.sh
	script to get list of genes near sigDB

1_make_cluster_files.py
	script to group genes into different buckets: 0 - not DE,
	not near sigDB; 1 - DE, not near sigDB; 2 - not DE, near
	sigDB; 3 - DE & near sigDB

2_run_go_enrichment_analyzer.sh
	running go enrichment anlayzer program to find GO terms
	enriched in different groups of genes

3_look_at_top_terms
	script to visualize top GO terms

preliminary_files/
	output of script 0

cluster_files/
	output of script 1

bg_gene_list.txt
gene_to_go.txt
	list of genes and GO terms they are associated with
	input to script 2

go_enrichment/
	output of script 2

