5/24/23 Erika Lee

files and scripts to generate the input files to the visualization
scripts in ../
run the python scripts in any order

hic/
tgif_output/
	'raw' input files from which to extract information around
	the regions of interest

get_submatrix.py
get_score.py
get_summit.py
	scripts to exact interation counts, boundary scroes, and
	significant boundaries around regions of interest	

submatrix/
scores/
summit/
	actual input files to the visualization script - submatrix
	of interaction counts, boundary scores, and significant
	boundaries (summit only) around regions of interest -
	generated by scripts above
 
get_config.py
	generate ini files that lays out the pointers to all input
	files so that the visualization scripts know where to
	fetch them from

config/
	config ini files generated by get_config.py
