5/24/23 Erika Lee

Identifying subset of GWAS SNPs whose trait maps to cardiovascular disease (or
any parent term)

mapping.txt
	GWAS trait to EFO mapping from: https://www.ebi.ac.uk/gwas/api/search/downloads/trait_mappings

gwasCatalog.txt
	hg19 GWAS catalog downloaded from
	http://hgdownload.soe.ucsc.edu/goldenPath/hg19/database/gwasCatalog.txt.gz
	-> table schema/column description: https://genome.ucsc.edu/cgi-bin/hgTables?db=hg19&hgta_group=phenDis&hgta_track=gwasCatalog&hgta_table=gwasCatalog&hgta_doSchema=describe+table+schema

get_cardio_snps.py
	script to map SNP traits to higher level term and filter down to those associated with 
	cardiovascular disease associated ones

cardio_snps.txt
	output of get_cardio_snps.py

list_of_parent_terms.txt
	list of unique parent terms from the mapping.txt

get_snps_by_parent_term.py
	script to map SNP traits to each parent EFO term
	
snps_by_parent_term/
	output of the script above 
