8/7/24 DL

Scripts for comparing the similarity of TAD boundary set between
original GM12878 data and downsampled data.

subsampling scripts/
	Scripts used to sample X% of reads in the original GM12878 HiC
	pairs file.

processing scripts/
	Script used to convert the subsampled pairs file into .hic format
	using the Juicer tool. Once in .hic format, we can further process
	the HiC matrices to be used for inputs to TAD calling methods.

grinch/
spectraltad/
tadcompare/
tgif_sig_diff/
topdom/
	Comparing the similarity of TAD boundary sets between depths
	within each method.

compile_jaccard/
	Compiling and visualizing results across all methods.

