12/11/24 DL

simulated.bed
true_boundaries.txt
	Bed file of bin coordinates for simulated matrices
	and boundary status of each bin in binary format (1=true)

grinch/
spectraltad/
tadcompare/
tgif_sig_diff/
topdom/
	scripts to measure accuracy of each method
	run measure_accuracy.sh in each directory

combine_and_plot.py
	script to combine precision and recall for all methods
	and plot them

compiled_accuracy.txt
shared_f-score.pdf
shared_precision.pdf
shared_recall.pdf
task-specific_f-score.pdf
task-specific_precision.pdf
task-specific_recall.pdf	
	output files of combine_and_plot.py

