This directory contains scripts for Combined Haplotype Test power calculations.

generate_power_sim_params.py - script to make table of simulation parameters

sim_haplotype_read_counts.R - simulates combined haplotype test input data. Should potentially
be swapped for simulate_counts.py script, which is more sophisticated...

run_power_analysis.sh - SGE cluster submission script to run combined haplotype test on simulated
data

