# Supplemental File 1: List of novel isoforms detected in more than 30% of cells in each sample.
#
# This list is based on the SQANTI3 output. For a description of the space-separated columns,
# please refer to the Glossary of classification file columns section in the SQANTI3-QC documentation:
# https://github.com/ConesaLab/SQANTI3/wiki/Understanding-the-output-of-SQANTI3-QC#glossary-of-classification-file-columns-classificationtxt
# The last two columns were added to indicate the sample name and the number of cells in which the novel isoforms were detected.
#
isoform chrom strand length exons structural_category associated_gene.x ref_length ref_exons diff_to_gene_TSS diff_to_gene_TTS subcategory RTS_stage FL perc_A_downstream_TTS dist_to_cage_peak within_cage_peak polyA_dist fl_assoc Group CellNumber
PB.167879.2 chr15 - 2509 11 novel_not_in_catalog PKM 2305 11 -11 0 at_least_one_novel_splicesite FALSE 20503 15 -5 TRUE -15 23603 ccRCC5 366
PB.140293.2 chr11 - 2259 9 novel_in_catalog HSPA8 2306 9 -1 1 combination_of_known_junctions FALSE 9292 25 -2 TRUE NA 10656 ccRCC5 361
PB.95003.2 chr7 - 1118 6 novel_not_in_catalog FIS1 870 5 12 -5 at_least_one_novel_splicesite FALSE 2796 10 -5 TRUE NA 3285 ccRCC5 353
PB.75694.432 chr5 + 1948 9 novel_not_in_catalog SQSTM1 2253 7 -14 -7 at_least_one_novel_splicesite FALSE 3855 35 -19 TRUE -16 4504 ccRCC5 352
PB.114035.2 chr9 + 1076 5 novel_not_in_catalog CLTA 1078 5 4 0 at_least_one_novel_splicesite FALSE 4915 25 -14 TRUE -17 5787 ccRCC5 346
PB.135987.2 chr11 + 795 7 novel_not_in_catalog NDUFS8 737 7 12 2 at_least_one_novel_splicesite FALSE 2213 5 0 TRUE -18 2690 ccRCC5 335
PB.10513.6 chr1 - 1614 14 novel_not_in_catalog ILF2 1852 14 3 38 at_least_one_novel_splicesite FALSE 1973 0 -8 TRUE -22 2264 ccRCC5 329
PB.2095.35 chr1 + 3064 7 novel_not_in_catalog CLIC4 4253 6 3 -3 intron_retention FALSE 1210 30 26 TRUE -14 1372 ccRCC5 324
PB.50462.6 chr3 + 1567 6 novel_in_catalog POLR2H 1807 6 -5 -2 combination_of_known_junctions FALSE 1978 10 -46 TRUE -27 2338 ccRCC5 320
PB.91087.33 chr7 - 776 6 novel_not_in_catalog LSM5 649 6 9 -3 at_least_one_novel_splicesite FALSE 1194 15 -9 TRUE NA 1362 ccRCC5 305
PB.75343.123 chr5 - 1171 5 novel_in_catalog CLTB 1139 6 -39 47 combination_of_known_junctions FALSE 1175 15 -2 TRUE NA 1376 ccRCC5 303
PB.136139.146 chr11 + 963 2 novel_not_in_catalog CCND1 553 2 1 -1 at_least_one_novel_splicesite FALSE 1126 5 1 TRUE -15 1319 ccRCC5 292
PB.163311.1 chr14 - 1418 8 novel_in_catalog CKB 1239 8 0 -1 combination_of_known_junctions FALSE 1621 5 1 TRUE NA 1832 ccRCC5 292
PB.72785.62 chr5 + 3009 18 novel_in_catalog MATR3 3970 18 -1 3 combination_of_known_splicesites FALSE 847 20 -14 TRUE -10 956 ccRCC5 292
PB.144559.72 chr12 - 3182 18 novel_in_catalog SLC38A1 3436 18 -37 0 combination_of_known_junctions FALSE 875 90 -6 TRUE NA 1015 ccRCC5 289
PB.32702.16 chr2 + 2394 14 novel_in_catalog SPATS2L 2250 14 -4 -26 combination_of_known_junctions FALSE 713 55 -5 TRUE -23 825 ccRCC5 285
PB.195255.101 chr20 - 2703 4 novel_not_in_catalog BCL2L1 3257 4 0 -1 at_least_one_novel_splicesite FALSE 1795 25 -1 TRUE NA 2080 ccRCC5 281
PB.1973.3 chr1 - 2549 10 novel_in_catalog HNRNPR 2694 11 1 14 combination_of_known_junctions FALSE 945 40 0 TRUE NA 1085 ccRCC5 276
PB.78341.14 chr6 - 1398 9 novel_in_catalog FLOT1 1866 13 1 -26 combination_of_known_junctions FALSE 652 55 7 TRUE NA 723 ccRCC5 275
PB.2865.11 chr1 - 2526 8 novel_not_in_catalog PHC2 2550 7 -11 -2 at_least_one_novel_splicesite FALSE 744 0 -1 TRUE NA 827 ccRCC5 273
PB.191740.2 chr19 + 1967 11 novel_not_in_catalog NUCB1 2406 13 -33 -2 intron_retention FALSE 663 30 -1 TRUE -10 755 ccRCC5 263
PB.202591.138 chr22 + 630 4 novel_in_catalog LGALS1 331 5 2 -3 intron_retention FALSE 834 15 0 TRUE -23 985 ccRCC5 259
PB.88426.2 chr7 + 3007 19 novel_not_in_catalog EIF3B 3096 19 2 -2 intron_retention FALSE 590 25 -34 TRUE -13 679 ccRCC5 257
PB.103077.231 chr8 - 2463 8 novel_in_catalog LYPLA1 2515 9 9 -6 combination_of_known_junctions FALSE 792 15 -20 TRUE NA 886 ccRCC5 256
PB.46207.10 chr3 + 1750 2 novel_not_in_catalog CDV3 3348 5 -42 -20 at_least_one_novel_splicesite FALSE 876 60 -24 TRUE NA 991 ccRCC5 252
PB.10764.26 chr1 + 2081 8 novel_not_in_catalog LMNA 3178 12 0 -1 intron_retention FALSE 636 5 1 TRUE -13 727 ccRCC5 250
PB.116791.11 chr9 - 2887 16 novel_not_in_catalog HNRNPK 2652 16 -11 -1 at_least_one_novel_splicesite FALSE 557 15 -16 TRUE NA 638 ccRCC5 249
PB.161107.3 chr14 + 1536 8 novel_in_catalog SRSF5 2815 9 5 0 intron_retention FALSE 546 5 1 TRUE -14 618 ccRCC5 247
PB.165256.164 chr15 + 2495 11 novel_in_catalog GOLM2 3974 10 15 0 combination_of_known_junctions FALSE 496 10 8 TRUE -17 553 ccRCC5 247
PB.79741.39 chr6 + 1476 2 novel_not_in_catalog VEGFA 3609 8 0 -2 at_least_one_novel_splicesite FALSE 2455 15 0 TRUE -17 2738 ccRCC5 245
PB.71170.551 chr5 + 2629 24 novel_in_catalog HSD17B4 2881 25 -1 0 combination_of_known_junctions FALSE 453 5 -28 TRUE -17 507 ccRCC5 239
PB.51815.1 chr4 - 2300 10 novel_in_catalog CTBP1 2488 10 47 -6 combination_of_known_junctions FALSE 503 30 13 TRUE NA 559 ccRCC5 234
PB.183075.8 chr17 + 2116 6 novel_not_in_catalog SLC16A3 2503 6 -2 -3 intron_retention FALSE 589 25 4 TRUE -25 629 ccRCC5 232
PB.78428.1 chr6 - 1423 11 novel_not_in_catalog DDX39B 1681 11 0 -2 at_least_one_novel_splicesite FALSE 478 15 -7 TRUE NA 536 ccRCC5 221
PB.113811.35 chr9 - 1715 4 novel_not_in_catalog SIGMAR1 1672 4 -10 0 at_least_one_novel_splicesite FALSE 833 10 -6 TRUE NA 970 ccRCC5 219
PB.88426.9 chr7 + 3082 19 novel_not_in_catalog EIF3B 3096 19 13 0 intron_retention FALSE 416 25 -23 TRUE -15 491 ccRCC5 219
PB.79786.1 chr6 + 2392 14 novel_in_catalog SLC29A1 2358 14 -20 0 combination_of_known_junctions FALSE 490 5 -17 TRUE -17 556 ccRCC5 217
PB.71967.60 chr5 + 3523 5 novel_not_in_catalog CDC42SE2 3485 5 -9 -1 intron_retention FALSE 407 15 -32 TRUE -18 454 ccRCC5 212
PB.139861.177 chr11 - 691 6 novel_not_in_catalog FXYD2 589 6 0 35 at_least_one_novel_splicesite FALSE 1536 25 -2 TRUE -7 1821 ccRCC5 209
PB.151147.60 chr12 + 1021 6 novel_in_catalog ARL6IP4 1318 6 -3 0 combination_of_known_junctions FALSE 359 0 -7 TRUE -17 432 ccRCC5 206
PB.101417.191 chr8 + 3261 5 novel_in_catalog BNIP3L 3452 6 0 -7 combination_of_known_splicesites FALSE 390 30 -17 TRUE -9 440 ccRCC5 205
PB.148767.21 chr12 + 1164 5 novel_not_in_catalog VEZT 2629 12 2 -20 at_least_one_novel_splicesite FALSE 370 60 2 TRUE NA 425 ccRCC5 205
PB.173870.1 chr16 + 2266 9 novel_in_catalog E2F4 2110 10 -21 -2 intron_retention FALSE 388 10 -37 TRUE -15 431 ccRCC5 205
PB.181815.2 chr17 + 2001 11 novel_in_catalog KPNA2 1973 11 0 -3 combination_of_known_junctions FALSE 935 15 -1 TRUE -27 1074 ccRCC5 205
PB.195621.467 chr20 - 763 4 novel_in_catalog EIF6 932 6 -8 35 combination_of_known_splicesites FALSE 444 20 -21 TRUE NA 504 ccRCC5 205
PB.179382.156 chr17 + 1370 3 novel_in_catalog EIF1 815 4 2 -3 intron_retention FALSE 386 20 2 TRUE -11 472 ccRCC5 204
PB.78625.10 chr6 + 785 2 novel_in_catalog BRD2 4834 14 7 -15 combination_of_known_splicesites FALSE 337 30 0 TRUE -14 369 ccRCC5 191
PB.170778.1 chr16 - 3312 17 novel_in_catalog GLYR1 3527 18 -3 21 combination_of_known_junctions FALSE 372 60 3 TRUE NA 413 ccRCC5 190
PB.191655.122 chr19 + 769 4 novel_in_catalog EMP3 649 5 -19 -1 combination_of_known_splicesites FALSE 362 5 -1 TRUE -13 426 ccRCC5 190
PB.170146.4 chr16 + 2444 18 novel_in_catalog RHOT2 2490 19 3 -3 intron_retention FALSE 383 25 -4 TRUE NA 451 ccRCC5 189
PB.27117.6 chr2 - 2161 14 novel_in_catalog BIN1 2487 19 -3 -34 combination_of_known_splicesites FALSE 393 80 -4 TRUE -39 452 ccRCC5 189
PB.145036.9 chr12 + 3076 11 novel_in_catalog SMARCD1 3237 12 36 -2 intron_retention FALSE 354 20 10 TRUE -12 419 ccRCC5 188
PB.170150.1 chr16 - 2115 8 novel_in_catalog JMJD8 1934 9 7 3 intron_retention FALSE 328 10 -16 TRUE NA 380 ccRCC5 187
PB.115357.110 chr9 + 1219 2 novel_in_catalog TJP2 490 4 29 -1 combination_of_known_splicesites FALSE 336 15 10 TRUE -20 372 ccRCC5 186
PB.135690.4 chr11 - 1283 3 novel_in_catalog CFL1 1245 4 1 -6 intron_retention FALSE 288 80 1 TRUE NA 323 ccRCC5 186
PB.99805.5 chr7 + 2383 9 novel_in_catalog DNAJB6 2489 10 -9 1 combination_of_known_splicesites FALSE 362 15 -15 TRUE -16 404 ccRCC5 186
PB.135943.4 chr11 - 921 4 novel_not_in_catalog CORO1B 615 4 -12 -7 at_least_one_novel_splicesite FALSE 331 30 -9 TRUE NA 372 ccRCC5 184
PB.196713.14 chr20 - 3175 13 novel_in_catalog STAU1 3334 14 -1 -4 combination_of_known_junctions FALSE 325 30 4 TRUE NA 373 ccRCC5 184
PB.50462.7 chr3 + 1830 6 novel_in_catalog POLR2H 1807 6 -2 -2 combination_of_known_junctions FALSE 324 30 -43 TRUE -26 392 ccRCC5 180
PB.195296.3 chr20 + 1471 5 novel_not_in_catalog TM9SF4 3768 18 0 0 at_least_one_novel_splicesite FALSE 274 15 -12 TRUE -17 295 ccRCC5 174
PB.172636.21 chr16 - 1045 4 novel_not_in_catalog VKORC1 1077 4 21 -1 at_least_one_novel_splicesite FALSE 315 30 23 TRUE NA 375 ccRCC5 171
PB.177631.8 chr17 - 1516 11 novel_in_catalog COPS3 1814 12 -18 6 combination_of_known_junctions FALSE 283 25 8 TRUE NA 327 ccRCC5 170
PB.3803.5 chr1 + 3133 11 novel_not_in_catalog PTPRF 6377 33 -2 2 at_least_one_novel_splicesite FALSE 412 15 21 TRUE -28 471 ccRCC5 169
PB.63079.5 chr5 - 2662 16 novel_not_in_catalog BRD9 2665 16 -3 1 at_least_one_novel_splicesite FALSE 278 15 -5 TRUE NA 312 ccRCC5 169
PB.150781.198 chr12 - 3085 21 novel_not_in_catalog TAOK3 4301 21 25 -18 at_least_one_novel_splicesite FALSE 294 95 0 TRUE -44 345 ccRCC5 168
PB.187465.459 chr19 + 1590 7 novel_in_catalog GPX4 851 7 5 0 combination_of_known_junctions FALSE 335 5 -7 TRUE -13 398 ccRCC5 167
PB.8475.74 chr1 - 1278 3 novel_not_in_catalog TAF13 2637 4 45 8 at_least_one_novel_splicesite FALSE 274 25 21 TRUE NA 309 ccRCC5 166
PB.149114.67 chr12 - 2774 2 novel_in_catalog IKBIP 2902 3 6 -4 combination_of_known_splicesites FALSE 325 20 -17 TRUE NA 362 ccRCC5 164
PB.183046.1 chr17 - 1860 14 novel_in_catalog DUS1L 2233 14 0 0 combination_of_known_junctions FALSE 260 25 -1 TRUE NA 294 ccRCC5 164
PB.3112.26 chr1 + 2859 6 novel_not_in_catalog THRAP3 4405 12 -3 -32 intron_retention FALSE 252 60 -22 TRUE -33 286 ccRCC5 164
PB.94905.218 chr7 + 1875 5 novel_in_catalog MEPCE 2261 5 0 1 combination_of_known_splicesites FALSE 308 15 -2 TRUE -28 360 ccRCC5 164
PB.1264.1 chr1 + 1382 2 novel_in_catalog TMEM51 1942 3 -14 -3 combination_of_known_splicesites FALSE 302 20 10 TRUE -14 344 ccRCC5 163
PB.187552.70 chr19 + 2631 8 novel_in_catalog SCAMP4 2501 7 -1 3 combination_of_known_junctions FALSE 248 20 -13 TRUE -16 292 ccRCC5 163
PB.182224.3 chr17 + 711 3 novel_not_in_catalog GPRC5C 1273 4 -40 -1 at_least_one_novel_splicesite FALSE 339 10 -23 TRUE -19 384 ccRCC5 162
PB.10383.5 chr1 - 2376 11 novel_not_in_catalog PI4KB 3934 11 -14 6 at_least_one_novel_splicesite FALSE 239 10 -28 TRUE NA 274 ccRCC5 161
PB.63351.4 chr5 + 3000 13 novel_in_catalog MTRR 3245 15 0 -2 intron_retention FALSE 252 40 -19 TRUE -17 281 ccRCC5 161
PB.125719.143 chr10 + 2997 13 novel_in_catalog DDX21 4664 15 0 10 combination_of_known_splicesites FALSE 335 100 -3 TRUE NA 399 ccRCC5 160
PB.19956.108 chr2 - 3698 20 novel_in_catalog GTF3C2 3992 19 4 -8 combination_of_known_junctions FALSE 261 25 5 TRUE NA 305 ccRCC5 160
PB.124395.21 chr10 - 2656 9 novel_in_catalog ARHGAP22 2729 10 -43 -1 combination_of_known_splicesites FALSE 281 10 -32 TRUE NA 328 ccRCC5 159
PB.144799.2 chr12 + 2728 22 novel_in_catalog PFKM 3063 22 6 0 combination_of_known_junctions FALSE 274 5 -16 TRUE -19 307 ccRCC5 158
PB.196147.36 chr20 + 1486 8 novel_not_in_catalog TOP1 3938 23 1 6 at_least_one_novel_splicesite FALSE 274 35 0 TRUE -13 311 ccRCC5 156
PB.196713.5 chr20 - 3356 13 novel_in_catalog STAU1 3411 13 4 0 combination_of_known_junctions FALSE 242 15 9 TRUE NA 284 ccRCC5 155
PB.191873.4 chr19 - 3253 3 novel_in_catalog NUP62 3361 3 -8 -3 intron_retention FALSE 294 35 -3 TRUE NA 338 ccRCC5 152
PB.36363.12 chr2 + 1278 2 novel_not_in_catalog LRRFIP1 1626 4 -11 -16 at_least_one_novel_splicesite FALSE 256 90 -30 TRUE NA 298 ccRCC5 151
PB.149378.21 chr12 + 1735 5 novel_in_catalog GAS2L3 2218 9 -2 -10 combination_of_known_splicesites FALSE 230 55 -3 TRUE -45 274 ccRCC5 150
PB.40152.3 chr3 + 1724 6 novel_not_in_catalog WDR6 4401 6 9 0 intron_retention FALSE 251 10 -16 TRUE -20 279 ccRCC5 150
PB.43297.3 chr3 + 1776 8 novel_in_catalog TFG 1888 9 17 0 combination_of_known_junctions FALSE 242 25 2 TRUE -14 275 ccRCC5 150
PB.10687.62 chr1 - 1545 7 novel_not_in_catalog SCAMP3 1537 8 -37 -1 intron_retention FALSE 203 20 8 TRUE NA 226 ccRCC5 149
PB.188080.2 chr19 + 2108 13 novel_in_catalog TRIP10 2035 14 -25 11 intron_retention FALSE 276 80 -40 TRUE NA 309 ccRCC5 149
PB.179371.5 chr17 - 1690 4 novel_in_catalog KRT19 1390 6 0 -1 intron_retention FALSE 450 25 -2 TRUE NA 502 ccRCC5 147
PB.187336.124 chr18 - 840 3 novel_not_in_catalog TXNL4A 3472 3 7 -7 at_least_one_novel_splicesite FALSE 317 5 6 TRUE NA 353 ccRCC5 147
PB.192953.31 chr20 + 1209 4 novel_not_in_catalog SIRPA 4580 8 -12 -1 at_least_one_novel_splicesite FALSE 216 10 -2 TRUE -22 243 ccRCC5 147
PB.135516.11 chr11 + 1605 6 novel_in_catalog FKBP2 574 6 0 -21 combination_of_known_splicesites FALSE 206 90 11 TRUE NA 242 ccRCC5 146
PB.35955.4 chr2 + 3233 17 novel_not_in_catalog ATG16L1 3213 17 0 0 at_least_one_novel_splicesite FALSE 222 20 4 TRUE -22 263 ccRCC5 146
PB.29279.10 chr2 + 3586 11 novel_in_catalog MARCHF7 6043 12 -19 -8 combination_of_known_splicesites FALSE 196 20 -31 TRUE -18 221 ccRCC5 145
PB.138714.12 chr11 + 2516 10 novel_in_catalog BIRC2 2617 10 0 -2 combination_of_known_junctions FALSE 210 40 -38 TRUE -6 243 ccRCC5 144
PB.183030.1 chr17 - 1888 8 novel_in_catalog PYCR1 1346 8 5 -3 intron_retention FALSE 398 45 -17 TRUE NA 458 ccRCC5 144
PB.187491.4 chr19 + 2442 8 novel_in_catalog CIRBP 571 6 4 -7 combination_of_known_junctions FALSE 246 35 20 TRUE -11 274 ccRCC5 144
PB.206537.9 chrX + 2800 19 novel_in_catalog RBM10 3201 24 -20 -4 combination_of_known_junctions FALSE 205 5 -5 TRUE -12 243 ccRCC5 144
PB.157418.10 chr13 + 2944 12 novel_in_catalog TMCO3 3058 13 0 -34 combination_of_known_splicesites FALSE 237 50 -47 TRUE -24 262 ccRCC5 143
PB.16449.14 chr1 + 895 3 novel_not_in_catalog GALNT2 4423 16 -27 0 at_least_one_novel_splicesite FALSE 199 10 -11 TRUE -17 224 ccRCC5 143
PB.127144.11 chr10 + 1847 3 novel_not_in_catalog TSPAN14 5476 8 17 -31 at_least_one_novel_splicesite FALSE 322 70 0 TRUE -37 374 ccRCC5 142
PB.15776.22 chr1 + 2611 6 novel_not_in_catalog FBXO28 5427 5 -6 -4 at_least_one_novel_splicesite FALSE 194 10 -5 TRUE -13 218 ccRCC5 142
PB.40016.26 chr3 + 3767 19 novel_not_in_catalog DHX30 3748 19 -13 -2 at_least_one_novel_splicesite FALSE 220 20 -8 TRUE -18 241 ccRCC5 142
PB.168688.4 chr15 - 981 3 novel_in_catalog MTHFS 2301 3 -30 -2 combination_of_known_junctions FALSE 219 20 -1 TRUE NA 255 ccRCC5 141
PB.28843.137 chr2 - 1406 12 novel_not_in_catalog PRPF40A 1408 13 0 -2 at_least_one_novel_splicesite FALSE 223 75 -2 TRUE -31 267 ccRCC5 140
PB.128787.10 chr10 - 3429 30 novel_in_catalog MMS19 3499 31 4 0 combination_of_known_junctions FALSE 225 25 2 TRUE NA 261 ccRCC5 138
PB.78743.2 chr6 + 1887 6 novel_in_catalog HMGA1 2159 5 32 0 combination_of_known_junctions FALSE 852 10 -1 TRUE -19 944 ccRCC5 138
PB.73860.83 chr5 - 2489 10 novel_in_catalog CSNK1A1 5444 11 -13 -18 combination_of_known_junctions FALSE 213 25 -6 TRUE NA 239 ccRCC5 136
PB.14623.3 chr1 + 1258 2 novel_not_in_catalog MAPKAPK2 3091 10 -6 -2 at_least_one_novel_splicesite FALSE 201 10 -17 TRUE -13 226 ccRCC5 135
PB.136139.136 chr11 + 1275 5 novel_not_in_catalog CCND1 4238 5 0 -1 at_least_one_novel_splicesite FALSE 211 5 0 TRUE -15 229 ccRCC5 134
PB.163112.1 chr14 - 2877 12 novel_in_catalog WARS1 2080 12 -1 0 combination_of_known_junctions FALSE 236 5 -3 TRUE NA 276 ccRCC5 132
PB.176817.15 chr17 + 1701 8 novel_in_catalog RNASEK-C17orf49 1662 8 -13 -3 combination_of_known_junctions FALSE 217 5 -15 TRUE -11 254 ccRCC5 132
PB.197874.43 chr20 + 1173 3 novel_in_catalog PPDPF 827 4 0 -43 intron_retention FALSE 320 10 -5 TRUE -16 388 ccRCC5 132
PB.202213.23 chr22 - 2362 8 novel_in_catalog PISD 1723 8 -20 -2 combination_of_known_junctions FALSE 224 70 -16 TRUE NA 252 ccRCC5 132
PB.210688.50 chrX - 3530 11 novel_in_catalog RBMX 2012 9 0 -1 combination_of_known_junctions FALSE 212 15 2 TRUE NA 242 ccRCC5 132
PB.187465.18 chr19 + 2127 6 novel_in_catalog PTBP1 2201 7 -10 -2 combination_of_known_junctions FALSE 257 0 -1 TRUE -13 291 ccRCC5 131
PB.202131.2 chr22 + 2769 20 novel_in_catalog SMTN 3296 21 0 -4 combination_of_known_splicesites FALSE 336 20 -1 TRUE -13 381 ccRCC5 131
PB.40172.1 chr3 - 2574 24 novel_in_catalog QARS1 2449 24 0 0 combination_of_known_junctions FALSE 229 10 -4 TRUE NA 268 ccRCC5 131
PB.88306.8 chr7 + 4375 23 novel_in_catalog SUN1 4488 21 9 -6 combination_of_known_junctions FALSE 180 40 1 TRUE -13 201 ccRCC5 131
PB.98420.23 chr7 - 2358 7 novel_in_catalog SLC37A3 2111 14 -1 4 combination_of_known_splicesites FALSE 195 30 -6 TRUE NA 217 ccRCC5 131
PB.138795.4 chr11 - 1230 7 novel_in_catalog DCUN1D5 12675 8 -12 -9 combination_of_known_junctions FALSE 192 30 -1 TRUE NA 212 ccRCC5 130
PB.179660.5 chr17 + 2117 5 novel_in_catalog TMUB2 1580 6 -11 2 intron_retention FALSE 177 15 -23 TRUE -19 210 ccRCC5 130
PB.190614.3 chr19 + 2845 10 novel_in_catalog PAK4 3025 11 -5 -1 combination_of_known_junctions FALSE 206 5 -15 TRUE -13 230 ccRCC5 130
PB.69483.107 chr5 + 2799 31 novel_in_catalog CAST 4330 31 3 3 combination_of_known_junctions FALSE 179 75 -19 TRUE -18 207 ccRCC5 130
PB.10687.37 chr1 - 3189 12 novel_in_catalog FAM189B 3190 12 0 -4 combination_of_known_junctions FALSE 202 20 -16 TRUE NA 222 ccRCC5 129
PB.132001.11 chr11 + 2983 18 novel_in_catalog RRM1 3142 19 0 -2 combination_of_known_junctions FALSE 301 30 8 TRUE -12 336 ccRCC5 129
PB.170530.19 chr16 + 2483 8 novel_in_catalog NAA60 818 7 0 0 combination_of_known_junctions FALSE 175 10 17 TRUE -16 195 ccRCC5 129
PB.206705.5 chrX - 2215 9 novel_not_in_catalog OTUD5 1493 9 8 -1 intron_retention FALSE 194 10 2 TRUE NA 227 ccRCC5 129
PB.132148.6 chr11 - 2293 8 novel_in_catalog ARFIP2 1763 8 6 1 intron_retention FALSE 177 20 -11 TRUE NA 199 ccRCC5 128
PB.195075.169 chr20 + 708 2 novel_not_in_catalog PYGB 4116 20 -32 -1 at_least_one_novel_splicesite FALSE 204 15 -22 TRUE -23 215 ccRCC5 127
PB.197795.5 chr20 + 821 5 novel_in_catalog SLCO4A1 2716 12 -32 -47 combination_of_known_splicesites FALSE 203 30 -2 TRUE -18 223 ccRCC5 127
PB.884.3 chr1 - 2758 25 novel_in_catalog EXOSC10 2721 24 17 -3 combination_of_known_junctions FALSE 202 35 17 TRUE NA 235 ccRCC5 127
PB.132709.30 chr11 + 886 3 novel_not_in_catalog MICAL2 3906 28 0 -3 at_least_one_novel_splicesite FALSE 372 25 -1 TRUE -10 427 ccRCC5 124
PB.94393.13 chr7 + 1046 2 novel_not_in_catalog PEG10 6392 3 0 0 at_least_one_novel_splicesite FALSE 276 25 0 TRUE -30 312 ccRCC5 124
PB.199730.44 chr21 + 2786 24 novel_in_catalog TTC3 3626 32 1 -3 combination_of_known_junctions FALSE 184 75 0 TRUE NA 221 ccRCC5 122
PB.90485.1 chr7 + 1270 8 novel_in_catalog PALS2 8346 12 -33 -3 combination_of_known_junctions FALSE 162 75 -20 TRUE NA 189 ccRCC5 122
PB.127820.47 chr10 + 2686 11 novel_not_in_catalog SHLD2 3601 10 -11 -2 at_least_one_novel_splicesite FALSE 166 25 -14 TRUE -13 193 ccRCC5 121
PB.85891.6 chr6 + 1710 10 novel_not_in_catalog LTV1 1853 11 -30 -9 at_least_one_novel_splicesite FALSE 193 30 0 TRUE -15 217 ccRCC5 121
PB.25281.373 chr2 + 1339 9 novel_not_in_catalog MAP4K4 3416 22 46 -1 at_least_one_novel_splicesite FALSE 189 30 18 TRUE -37 222 ccRCC5 120
PB.164726.12 chr15 + 1215 7 novel_not_in_catalog EIF2AK4 5538 39 -11 4 at_least_one_novel_splicesite FALSE 171 25 -10 TRUE -17 187 ccRCC5 119
PB.203633.2 chr22 + 2327 10 novel_not_in_catalog TRABD 2305 10 -13 -3 intron_retention FALSE 166 20 -18 TRUE -13 187 ccRCC5 119
PB.141277.1 chr12 - 3495 9 novel_in_catalog FOXM1 3552 9 43 2 intron_retention FALSE 362 5 41 TRUE NA 427 ccRCC5 118
PB.16868.5 chr1 - 1254 10 novel_in_catalog RBM34 1847 11 3 13 combination_of_known_junctions FALSE 146 20 9 TRUE NA 169 ccRCC5 118
PB.188238.74 chr19 + 1958 6 novel_in_catalog ANGPTL4 1872 7 1 -1 intron_retention FALSE 199 5 1 TRUE -15 221 ccRCC5 118
PB.124247.3 chr10 - 3300 9 novel_in_catalog NCOA4 3461 10 -3 -1 combination_of_known_junctions FALSE 167 10 -9 TRUE NA 197 ccRCC5 117
PB.150233.14 chr12 - 2760 20 novel_in_catalog GIT2 5598 20 -19 21 combination_of_known_junctions FALSE 148 65 -9 TRUE NA 171 ccRCC5 117
PB.177667.4 chr17 + 1692 6 novel_not_in_catalog RAI1 7677 6 -7 -3 at_least_one_novel_splicesite FALSE 158 25 -19 TRUE -21 177 ccRCC5 115
PB.195075.191 chr20 + 2855 15 novel_not_in_catalog PYGB 4116 20 14 -2 at_least_one_novel_splicesite FALSE 152 15 24 TRUE -22 174 ccRCC5 115
PB.136185.25 chr11 + 2199 7 novel_not_in_catalog PPFIA1 5240 28 19 2 at_least_one_novel_splicesite FALSE 156 50 23 TRUE -28 178 ccRCC5 114
PB.141534.19 chr12 + 1378 9 novel_not_in_catalog GAPDH 1285 9 0 -3 at_least_one_novel_splicesite FALSE 170 10 -2 TRUE -16 200 ccRCC5 114
PB.29193.29 chr2 + 2540 13 novel_not_in_catalog PKP4 5777 21 -44 -11 at_least_one_novel_splicesite FALSE 142 60 16 TRUE NA 168 ccRCC5 114
PB.91165.4 chr7 + 2325 11 novel_not_in_catalog FKBP9 3621 11 -1 -31 at_least_one_novel_splicesite FALSE 150 35 -31 TRUE -13 160 ccRCC5 114
PB.132084.12 chr11 + 3852 7 novel_in_catalog TRIM22 2888 8 6 -1 intron_retention FALSE 161 25 -32 TRUE -16 179 ccRCC5 113
PB.176841.50 chr17 - 1531 8 novel_not_in_catalog CTDNEP1 1767 8 0 38 intron_retention FALSE 164 40 -13 TRUE NA 191 ccRCC5 113
PB.190093.3 chr19 + 1004 5 novel_not_in_catalog GRAMD1A 808 6 -39 29 at_least_one_novel_splicesite FALSE 169 5 -21 TRUE NA 192 ccRCC5 113
PB.50628.170 chr3 - 3137 14 novel_in_catalog IGF2BP2 3291 15 -2 -12 combination_of_known_splicesites FALSE 217 80 -15 TRUE NA 259 ccRCC5 113
PB.107698.2 chr8 + 1069 2 novel_not_in_catalog OXR1 1318 2 -29 -1 at_least_one_novel_splicesite FALSE 185 20 -3 TRUE -16 212 ccRCC5 112
PB.2701.51 chr1 - 947 4 novel_in_catalog PTP4A2 3910 6 8 -50 intron_retention FALSE 153 40 -11 TRUE NA 175 ccRCC5 112
PB.180070.1 chr17 + 1905 14 novel_in_catalog CDK5RAP3 1834 14 -2 -2 intron_retention FALSE 155 20 -22 TRUE -15 176 ccRCC5 111
PB.195.5 chr1 - 1965 6 novel_not_in_catalog PEX10 2835 6 2 16 intron_retention FALSE 151 35 7 TRUE NA 176 ccRCC5 111
PB.91023.4 chr7 - 1012 3 novel_in_catalog GGCT 1158 4 0 0 combination_of_known_junctions FALSE 162 20 -13 TRUE NA 199 ccRCC5 111
PB.185798.2 chr19 + 1894 9 novel_not_in_catalog CALR 1901 9 0 -7 intron_retention FALSE 7075 0 4 TRUE -10 7739 ccRCC4 979
PB.137262.1 chr11 - 2259 9 novel_in_catalog HSPA8 2306 9 0 2 combination_of_known_junctions FALSE 7851 20 -1 TRUE NA 8644 ccRCC4 976
PB.145512.1 chr12 + 1634 8 novel_in_catalog SLC25A3 6087 8 0 20 combination_of_known_junctions FALSE 5559 15 -2 TRUE -36 6218 ccRCC4 974
PB.138556.1 chr12 + 805 5 novel_not_in_catalog PTMS 820 5 -24 -2 at_least_one_novel_splicesite FALSE 2562 10 -9 TRUE -24 2825 ccRCC4 844
PB.176668.44 chr17 + 1917 7 novel_not_in_catalog ITGB3 1668 9 -23 -8 at_least_one_novel_splicesite FALSE 2145 45 -3 TRUE -11 2338 ccRCC4 742
PB.2762.30 chr1 - 2373 7 novel_in_catalog PHC2 2548 8 6 -2 combination_of_known_junctions FALSE 1736 0 3 TRUE NA 1892 ccRCC4 735
PB.185659.2 chr19 + 2216 19 novel_in_catalog PRKCSH 2100 18 4 -2 combination_of_known_junctions FALSE 1156 15 4 TRUE -14 1247 ccRCC4 610
PB.173657.1 chr17 + 1253 6 novel_not_in_catalog EIF5A 1256 6 -10 -3 at_least_one_novel_splicesite FALSE 1177 25 -5 TRUE -17 1243 ccRCC4 605
PB.66712.14 chr5 - 2671 13 novel_in_catalog PLK2 2792 15 2 0 intron_retention FALSE 1609 30 0 TRUE NA 1760 ccRCC4 574
PB.24247.14 chr2 - 1015 3 novel_not_in_catalog TGOLN2 6050 4 1 6 at_least_one_novel_splicesite FALSE 1021 35 -9 TRUE NA 1101 ccRCC4 555
PB.175012.333 chr17 - 2070 10 novel_in_catalog RAB34 1741 10 -12 0 intron_retention FALSE 874 10 -16 TRUE NA 956 ccRCC4 547
PB.176069.23 chr17 + 2591 11 novel_in_catalog FKBP10 2585 10 9 -2 combination_of_known_junctions FALSE 974 15 4 TRUE -9 1057 ccRCC4 546
PB.24183.13 chr2 + 749 2 novel_in_catalog TMSB10 461 3 0 4 intron_retention FALSE 1157 5 1 TRUE -20 1300 ccRCC4 545
PB.11341.41 chr1 + 3551 4 novel_not_in_catalog MPZL1 3421 3 1 0 at_least_one_novel_splicesite FALSE 869 15 0 TRUE -15 969 ccRCC4 518
PB.134115.161 chr11 - 1361 7 novel_not_in_catalog CLNS1A 2982 7 0 40 at_least_one_novel_splicesite FALSE 790 15 1 TRUE NA 864 ccRCC4 504
PB.92444.1 chr7 - 2062 11 novel_in_catalog GUSB 2199 12 -20 -2 combination_of_known_junctions FALSE 833 45 -12 TRUE NA 906 ccRCC4 503
PB.208051.1 chrX + 1341 13 novel_not_in_catalog FAM50A 1337 13 -3 -1 at_least_one_novel_splicesite FALSE 852 25 -1 TRUE -45 920 ccRCC4 491
PB.157334.1 chr14 + 715 7 novel_in_catalog SRSF5 1638 8 3 -14 combination_of_known_junctions FALSE 748 40 -1 TRUE -32 838 ccRCC4 489
PB.178745.3 chr17 + 1675 4 novel_in_catalog SLC9A3R1 1993 6 -1 -3 combination_of_known_splicesites FALSE 834 20 -2 TRUE NA 909 ccRCC4 482
PB.94850.248 chr7 - 2545 16 novel_in_catalog TAF6 2764 16 0 0 combination_of_known_splicesites FALSE 697 25 -4 TRUE NA 769 ccRCC4 458
PB.97191.42 chr7 + 1128 3 novel_not_in_catalog CALU 3210 6 -7 -6 at_least_one_novel_splicesite FALSE 748 25 -13 TRUE -12 813 ccRCC4 457
PB.176485.174 chr17 - 1611 3 novel_not_in_catalog C1QL1 1527 2 0 3 at_least_one_novel_splicesite FALSE 989 5 1 TRUE NA 1083 ccRCC4 452
PB.142699.6 chr12 + 2689 15 novel_in_catalog OS9 2682 15 -6 0 combination_of_known_junctions FALSE 635 25 -16 TRUE -14 713 ccRCC4 444
PB.64218.446 chr5 + 1640 4 novel_not_in_catalog ANKRD33B 9586 4 -20 0 at_least_one_novel_splicesite FALSE 829 25 5 TRUE -21 922 ccRCC4 436
PB.172673.14 chr16 - 3392 9 novel_not_in_catalog ZDHHC7 1488 9 27 -2 intron_retention FALSE 775 25 17 TRUE NA 848 ccRCC4 435
PB.4690.3 chr1 - 3508 30 novel_in_catalog NRDC 3594 31 0 0 combination_of_known_splicesites FALSE 642 25 3 TRUE NA 694 ccRCC4 427
PB.171960.3 chr16 - 1852 13 novel_in_catalog KARS1 1991 14 -1 -6 combination_of_known_splicesites FALSE 643 30 6 TRUE NA 710 ccRCC4 421
PB.185838.1 chr19 + 1937 2 novel_not_in_catalog IER2 2110 2 0 -6 intron_retention FALSE 679 30 -44 TRUE -13 733 ccRCC4 393
PB.129140.1 chr11 - 2652 15 novel_in_catalog NAP1L4 2479 15 9 -3 combination_of_known_junctions FALSE 613 15 13 TRUE NA 677 ccRCC4 392
PB.97163.1 chr7 - 2398 14 novel_in_catalog IMPDH1 2479 15 -1 -6 combination_of_known_junctions FALSE 574 15 3 TRUE NA 632 ccRCC4 390
PB.93172.74 chr7 + 805 3 novel_in_catalog HSPB1 777 3 1 1 combination_of_known_junctions FALSE 566 10 -3 TRUE -21 600 ccRCC4 389
PB.184560.57 chr19 - 1155 8 novel_not_in_catalog POLR2E 2854 8 -1 -5 intron_retention FALSE 574 30 -6 TRUE NA 631 ccRCC4 382
PB.128937.3 chr11 + 3274 14 novel_not_in_catalog PGGHG 3699 14 2 -1 intron_retention FALSE 626 20 3 TRUE -21 687 ccRCC4 379
PB.196027.20 chr21 + 1377 4 novel_not_in_catalog SON 2463 11 2 -6 at_least_one_novel_splicesite FALSE 558 30 -8 TRUE -12 598 ccRCC4 378
PB.25533.15 chr2 + 1452 2 novel_not_in_catalog POU3F3 4401 4 -22 -9 at_least_one_novel_splicesite FALSE 516 35 -28 TRUE -7 559 ccRCC4 371
PB.193544.56 chr20 - 913 6 novel_in_catalog STAU1 3334 14 -3 -34 combination_of_known_junctions FALSE 502 70 -4 TRUE NA 560 ccRCC4 367
PB.186123.139 chr19 + 3266 11 novel_not_in_catalog COLGALT1 3647 12 -14 -1 at_least_one_novel_splicesite FALSE 499 10 -31 TRUE -24 548 ccRCC4 365
PB.145777.8 chr12 + 2451 11 novel_in_catalog GAS2L3 5736 10 -22 1 combination_of_known_junctions FALSE 519 70 -23 TRUE -14 585 ccRCC4 362
PB.138512.10 chr12 - 2068 9 novel_in_catalog TNFRSF1A 2171 10 0 6 combination_of_known_junctions FALSE 504 15 -6 TRUE NA 558 ccRCC4 358
PB.132048.4 chr11 + 1942 11 novel_in_catalog DDB2 1815 10 -15 0 combination_of_known_junctions FALSE 555 10 -4 TRUE -14 612 ccRCC4 356
PB.114354.15 chr9 - 2860 16 novel_not_in_catalog HNRNPK 2889 17 0 -1 at_least_one_novel_splicesite FALSE 488 15 0 TRUE NA 525 ccRCC4 353
PB.128860.3 chr10 - 1250 8 novel_not_in_catalog ECHS1 1277 8 5 17 at_least_one_novel_splicesite FALSE 465 25 0 TRUE NA 526 ccRCC4 348
PB.72091.141 chr5 + 2265 7 novel_not_in_catalog CDC42SE2 3591 6 0 -2 at_least_one_novel_splicesite FALSE 466 15 -23 TRUE -17 534 ccRCC4 344
PB.193700.184 chr20 - 1074 9 novel_in_catalog DPM1 1097 9 0 -1 combination_of_known_junctions FALSE 484 20 -1 TRUE NA 537 ccRCC4 340
PB.47515.9 chr3 - 1372 9 novel_in_catalog PDCD10 2133 9 -5 19 combination_of_known_junctions FALSE 462 50 9 TRUE NA 505 ccRCC4 340
PB.88411.140 chr7 + 2984 20 novel_in_catalog EIF3B 3096 19 -11 -1 combination_of_known_junctions FALSE 494 25 -47 TRUE -14 566 ccRCC4 337
PB.11414.93 chr1 + 1920 4 novel_not_in_catalog SFT2D2 1073 7 -7 -4 at_least_one_novel_splicesite FALSE 474 30 -27 TRUE -18 503 ccRCC4 336
PB.26230.117 chr2 - 2970 16 novel_not_in_catalog SLC35F5 3120 17 10 9 intron_retention FALSE 459 30 5 TRUE NA 500 ccRCC4 335
PB.159387.3 chr14 - 1423 8 novel_in_catalog CKB 1239 8 0 0 combination_of_known_junctions FALSE 640 5 -2 TRUE NA 702 ccRCC4 334
PB.93130.292 chr7 + 1297 2 novel_not_in_catalog CLIP2 5445 16 6 -2 at_least_one_novel_splicesite FALSE 424 10 -25 TRUE -18 471 ccRCC4 325
PB.118302.91 chr9 - 1580 9 novel_not_in_catalog DYNC2I2 1823 9 7 -4 at_least_one_novel_splicesite FALSE 413 25 9 TRUE NA 462 ccRCC4 314
PB.185898.68 chr19 + 1324 7 novel_not_in_catalog ADGRE5 3054 19 -1 -2 at_least_one_novel_splicesite FALSE 526 15 -3 TRUE -14 573 ccRCC4 314
PB.198055.1 chr22 + 2251 17 novel_not_in_catalog GGT1 2630 16 -12 -2 at_least_one_novel_splicesite FALSE 491 10 0 TRUE NA 537 ccRCC4 314
PB.70214.8 chr5 + 3476 24 novel_in_catalog PAM 3649 25 -5 -1 combination_of_known_junctions FALSE 415 20 -10 TRUE -14 458 ccRCC4 311
PB.167021.1 chr16 + 2892 10 novel_in_catalog PIGQ 2958 11 -16 0 intron_retention FALSE 420 10 -16 TRUE -18 458 ccRCC4 309
PB.185625.106 chr19 + 3432 20 novel_in_catalog ILF3 6119 20 -16 -20 combination_of_known_junctions FALSE 401 75 -10 TRUE NA 440 ccRCC4 307
PB.23570.2 chr2 - 1181 6 novel_not_in_catalog CALM2 1210 6 1 0 at_least_one_novel_splicesite FALSE 1748 30 -3 TRUE -22 2332 ccRCC3 248
PB.55914.2 chr3 + 1884 11 novel_in_catalog EIF4A2 1886 11 0 -2 combination_of_known_junctions FALSE 1313 20 -2 TRUE -14 1726 ccRCC3 248
PB.15446.21 chr1 + 3221 12 novel_in_catalog CD46 3278 13 4 1 intron_retention FALSE 1112 20 -23 TRUE -16 1450 ccRCC3 242
PB.65919.306 chr4 - 736 7 novel_in_catalog NDUFC1 696 6 8 -2 combination_of_known_splicesites FALSE 1818 45 18 TRUE NA 2277 ccRCC3 239
PB.12799.65 chr1 - 714 12 novel_not_in_catalog GAS5 731 12 1 -14 at_least_one_novel_splicesite FALSE 1936 45 -1 TRUE NA 2693 ccRCC3 228
PB.167055.24 chr14 - 1716 8 novel_in_catalog HNRNPC 4501 8 -3 0 combination_of_known_junctions FALSE 1180 50 2 TRUE NA 1584 ccRCC3 227
PB.153804.4 chr12 + 1237 11 novel_not_in_catalog TMBIM6 2837 10 0 -30 at_least_one_novel_splicesite FALSE 1037 65 0 TRUE -24 1191 ccRCC3 225
PB.78404.60 chr5 + 2713 14 novel_in_catalog MATR3 5069 15 0 5 combination_of_known_junctions FALSE 750 25 -3 TRUE -23 987 ccRCC3 220
PB.194693.39 chr17 + 1704 10 novel_not_in_catalog PRKAR1A 4253 11 1 -9 at_least_one_novel_splicesite FALSE 1029 55 -37 TRUE -9 1288 ccRCC3 219
PB.109914.7 chr8 - 1666 9 novel_not_in_catalog CLU 2749 9 0 -1 intron_retention FALSE 18659 10 0 TRUE NA 25964 ccRCC3 215
PB.143631.1 chr11 - 2612 13 novel_in_catalog SF1 2850 13 -4 -1 combination_of_known_junctions FALSE 676 5 21 TRUE NA 925 ccRCC3 215
PB.154617.5 chr12 + 2667 15 novel_in_catalog OS9 2682 15 0 -3 combination_of_known_junctions FALSE 751 30 3 TRUE -11 1037 ccRCC3 214
PB.200740.3 chr18 + 2623 12 novel_not_in_catalog CNDP2 2653 12 -16 0 at_least_one_novel_splicesite FALSE 1162 40 -4 TRUE -20 1571 ccRCC3 212
PB.166828.158 chr13 + 1616 7 novel_not_in_catalog LAMP1 2701 9 -33 -3 at_least_one_novel_splicesite FALSE 799 0 0 TRUE -17 951 ccRCC3 208
PB.167055.54 chr14 - 1857 9 novel_in_catalog HNRNPC 1924 10 -3 -1 intron_retention FALSE 657 35 2 TRUE NA 827 ccRCC3 207
PB.123131.5 chr9 - 2825 16 novel_not_in_catalog HNRNPK 2889 17 0 -1 at_least_one_novel_splicesite FALSE 641 15 -3 TRUE NA 777 ccRCC3 206
PB.201292.1 chr19 - 2657 11 novel_in_catalog TMEM259 2687 11 -19 0 intron_retention FALSE 566 5 -10 TRUE NA 765 ccRCC3 206
PB.192069.4 chr17 - 2845 16 novel_not_in_catalog ACLY 2974 21 -3 -1 at_least_one_novel_splicesite FALSE 612 15 -5 TRUE NA 829 ccRCC3 191
PB.27435.17 chr2 + 1408 2 novel_not_in_catalog POU3F3 4401 4 27 -4 at_least_one_novel_splicesite FALSE 1037 25 21 TRUE -12 1340 ccRCC3 188
PB.161697.2 chr13 + 1643 3 novel_in_catalog POLR1D 565 3 0 -3 combination_of_known_junctions FALSE 518 25 -34 TRUE -16 701 ccRCC3 187
PB.75847.19 chr5 + 3405 23 novel_in_catalog PAM 3649 25 2 -1 combination_of_known_junctions FALSE 623 20 4 TRUE -14 774 ccRCC3 184
PB.84832.1 chr6 + 2141 7 novel_in_catalog SLC39A7 2153 8 -25 -1 combination_of_known_junctions FALSE 469 15 -2 TRUE -21 625 ccRCC3 183
PB.81092.1 chr5 - 1166 5 novel_in_catalog CLTB 1139 6 -37 44 combination_of_known_junctions FALSE 559 20 0 TRUE NA 788 ccRCC3 182
PB.76992.4 chr5 + 2636 24 novel_in_catalog HSD17B4 2589 25 -6 0 combination_of_known_junctions FALSE 408 5 -36 TRUE -16 541 ccRCC3 181
PB.111238.139 chr8 - 2442 8 novel_in_catalog LYPLA1 2515 9 0 -6 combination_of_known_junctions FALSE 454 15 1 TRUE NA 587 ccRCC3 177
PB.56982.1 chr4 - 2322 10 novel_in_catalog CTBP1 2488 10 22 -6 combination_of_known_junctions FALSE 415 30 -12 TRUE NA 519 ccRCC3 176
PB.1768.1 chr1 + 2342 9 novel_not_in_catalog PINK1 2657 8 -2 0 at_least_one_novel_splicesite FALSE 417 25 -19 TRUE -18 595 ccRCC3 173
PB.107296.1 chr7 + 2930 2 novel_in_catalog REPIN1 1192 3 -3 -2 combination_of_known_splicesites FALSE 356 15 -7 TRUE -14 480 ccRCC3 168
PB.44135.41 chr3 + 1414 3 novel_not_in_catalog WDR6 852 3 0 0 intron_retention FALSE 373 10 6 TRUE -18 458 ccRCC3 166
PB.154243.3 chr12 - 3039 16 novel_in_catalog CALCOCO1 5576 15 5 1 combination_of_known_junctions FALSE 307 30 4 TRUE -44 407 ccRCC3 164
PB.98373.14 chr7 - 771 6 novel_not_in_catalog LSM5 649 6 9 -2 at_least_one_novel_splicesite FALSE 407 20 -9 TRUE NA 549 ccRCC3 164
PB.128812.92 chr10 + 1580 7 novel_not_in_catalog PFKFB3 4482 15 0 -4 at_least_one_novel_splicesite FALSE 540 40 -1 TRUE -15 671 ccRCC3 160
PB.108723.2 chr8 + 2113 9 novel_in_catalog FDFT1 2368 9 9 -3 combination_of_known_junctions FALSE 418 30 5 TRUE -18 536 ccRCC3 158
PB.209456.7 chr20 + 892 4 novel_in_catalog XRN2 3408 30 -25 -32 combination_of_known_splicesites FALSE 343 75 -31 TRUE NA 458 ccRCC3 157
PB.206553.2 chr19 + 893 3 novel_not_in_catalog EPN1 2355 10 -29 -7 at_least_one_novel_splicesite FALSE 337 15 -17 TRUE -16 435 ccRCC3 156
PB.104848.1 chr7 - 2526 9 novel_in_catalog TSPAN12 1495 9 -8 -1 combination_of_known_junctions FALSE 529 15 -9 TRUE NA 674 ccRCC3 154
PB.154604.479 chr12 - 1664 14 novel_in_catalog DCTN2 1705 15 0 0 combination_of_known_junctions FALSE 316 0 -16 TRUE NA 428 ccRCC3 151
PB.212442.9 chr20 + 1266 3 novel_not_in_catalog TPD52L2 2197 5 11 -3 at_least_one_novel_splicesite FALSE 286 15 -24 TRUE -16 386 ccRCC3 147
PB.194647.435 chr17 + 1991 11 novel_in_catalog KPNA2 1973 11 0 -1 combination_of_known_junctions FALSE 307 15 -1 TRUE -17 444 ccRCC3 145
PB.186297.4 chr16 + 1279 5 novel_not_in_catalog CDH3 4452 16 0 -2 at_least_one_novel_splicesite FALSE 808 15 -11 TRUE -11 1071 ccRCC3 144
PB.211334.6 chr20 - 1075 9 novel_in_catalog DPM1 1084 10 0 18 combination_of_known_junctions FALSE 278 30 -1 TRUE NA 355 ccRCC3 144
PB.159803.16 chr12 + 1472 6 novel_not_in_catalog MLEC 6341 5 0 -4 at_least_one_novel_splicesite FALSE 314 15 -3 TRUE -12 376 ccRCC3 142
PB.78370.13 chr5 + 1118 7 novel_not_in_catalog CTNNA1 3831 19 2 0 at_least_one_novel_splicesite FALSE 310 35 -12 TRUE -21 345 ccRCC3 139
PB.79616.20 chr5 + 2373 13 novel_in_catalog G3BP1 10227 12 0 -9 combination_of_known_junctions FALSE 306 40 0 TRUE -9 394 ccRCC3 138
PB.226079.5 chrX + 2823 10 novel_in_catalog HTATSF1 3019 10 -6 -8 combination_of_known_junctions FALSE 252 45 -16 TRUE -19 361 ccRCC3 137
PB.148051.245 chr11 - 831 5 novel_in_catalog FXYD2 513 6 0 37 intron_retention FALSE 350 20 -7 TRUE NA 505 ccRCC3 135
PB.201422.2 chr19 + 2816 12 novel_in_catalog CSNK1G2 2895 12 26 -28 combination_of_known_junctions FALSE 215 80 38 TRUE -6 283 ccRCC3 135
PB.84739.11 chr6 - 2608 18 novel_not_in_catalog ATF6B 2626 18 3 -12 at_least_one_novel_splicesite FALSE 249 25 -20 TRUE NA 339 ccRCC3 134
PB.148051.252 chr11 - 815 5 novel_in_catalog FXYD2 589 6 0 28 intron_retention FALSE 485 45 -2 TRUE -7 745 ccRCC3 133
PB.155512.1 chr12 + 2167 10 novel_not_in_catalog CPSF6 6584 10 0 -1 at_least_one_novel_splicesite FALSE 200 20 -5 TRUE -13 255 ccRCC3 133
PB.160079.357 chr12 - 1894 10 novel_in_catalog RSRC2 2001 11 0 -24 combination_of_known_junctions FALSE 231 50 -1 TRUE -32 331 ccRCC3 133
PB.4974.5 chr1 - 3202 31 novel_not_in_catalog NRDC 3594 31 0 2 at_least_one_novel_splicesite FALSE 236 30 -1 TRUE NA 304 ccRCC3 132
PB.210260.2 chr20 + 1321 4 novel_in_catalog MANBAL 1539 5 -9 -2 combination_of_known_splicesites FALSE 234 10 -9 TRUE -19 319 ccRCC3 130
PB.61855.2 chr4 + 1685 4 novel_in_catalog ENOPH1 1689 5 -19 0 combination_of_known_splicesites FALSE 228 20 -28 TRUE -16 287 ccRCC3 129
PB.137223.1 chr10 - 2495 21 novel_in_catalog XPNPEP1 2467 20 0 -2 combination_of_known_junctions FALSE 206 5 -39 TRUE NA 271 ccRCC3 128
PB.185677.4 chr16 + 2791 4 novel_not_in_catalog CX3CL1 3285 3 0 -3 at_least_one_novel_splicesite FALSE 268 30 -1 TRUE -13 362 ccRCC3 128
PB.44135.42 chr3 + 1584 5 novel_in_catalog WDR6 1883 6 0 1 intron_retention FALSE 220 10 9 TRUE -19 330 ccRCC3 126
PB.148051.251 chr11 - 547 5 novel_in_catalog FXYD2 513 6 3 29 combination_of_known_splicesites FALSE 267 40 -4 TRUE NA 347 ccRCC3 123
PB.65233.6 chr4 + 3201 3 novel_in_catalog SPRY1 2603 3 39 -1 combination_of_known_junctions FALSE 256 20 -3 TRUE -10 331 ccRCC3 123
PB.146809.94 chr11 + 1492 7 novel_in_catalog BIRC2 3764 9 0 -3 combination_of_known_junctions FALSE 210 35 -31 TRUE -5 285 ccRCC3 122
PB.165934.2 chr13 + 1853 6 novel_in_catalog UBAC2 2259 9 -27 -2 combination_of_known_splicesites FALSE 221 15 2 TRUE -15 296 ccRCC3 121
PB.167311.30 chr14 + 2534 15 novel_in_catalog DCAF11 2711 15 2 -2 combination_of_known_junctions FALSE 213 5 -26 TRUE -14 271 ccRCC3 121
PB.52544.15 chr3 + 2261 9 novel_in_catalog RNF13 2336 10 -1 -6 combination_of_known_junctions FALSE 212 25 -35 TRUE -23 277 ccRCC3 120
PB.141.7 chr1 - 2212 12 novel_in_catalog CCNL2 1598 12 3 -2 combination_of_known_junctions FALSE 223 40 9 TRUE NA 304 ccRCC3 117
PB.220338.47 chrX + 815 3 novel_not_in_catalog EIF2S3 3457 12 0 -3 at_least_one_novel_splicesite FALSE 223 35 5 TRUE -18 302 ccRCC3 116
PB.72117.8 chr5 - 1339 7 novel_in_catalog MOCS2 4166 7 -2 0 combination_of_known_junctions FALSE 212 35 -22 TRUE NA 293 ccRCC3 116
PB.143996.1 chr11 - 896 7 novel_in_catalog TMEM134 3551 7 0 -1 combination_of_known_junctions FALSE 221 25 -24 TRUE NA 289 ccRCC3 115
PB.108723.3 chr8 + 2444 9 novel_in_catalog FDFT1 2368 9 9 -3 combination_of_known_junctions FALSE 223 25 5 TRUE -16 300 ccRCC3 113
PB.184686.1 chr16 + 1953 12 novel_in_catalog PRR14 2316 11 0 14 combination_of_known_junctions FALSE 163 30 2 TRUE -34 221 ccRCC3 113
PB.148051.243 chr11 - 547 5 novel_not_in_catalog FXYD2 589 6 0 37 at_least_one_novel_splicesite FALSE 219 20 -2 TRUE -7 282 ccRCC3 112
PB.142957.1 chr11 + 2438 9 novel_in_catalog SLC39A13 2330 10 -2 0 intron_retention FALSE 225 5 -22 TRUE -13 285 ccRCC3 111
PB.170025.4 chr14 + 1632 5 novel_in_catalog PPM1A 8231 6 0 -13 combination_of_known_splicesites FALSE 169 60 -29 TRUE -10 215 ccRCC3 111
PB.191724.12 chr17 - 1860 11 novel_in_catalog PCGF2 3062 12 -29 8 combination_of_known_splicesites FALSE 168 50 -18 TRUE NA 210 ccRCC3 111
PB.202166.1 chr19 - 1237 5 novel_not_in_catalog CD320 1253 5 -2 2 at_least_one_novel_splicesite FALSE 222 0 -18 TRUE NA 289 ccRCC3 108
PB.204097.3 chr19 + 2671 18 novel_not_in_catalog GRAMD1A 2523 18 -29 0 at_least_one_novel_splicesite FALSE 183 0 -11 TRUE -13 261 ccRCC3 108
PB.9625.16 chr1 + 1650 10 novel_not_in_catalog ATP1A1 3670 23 -2 -1 at_least_one_novel_splicesite FALSE 202 10 0 TRUE -17 288 ccRCC3 108
PB.111238.153 chr8 - 1404 9 novel_not_in_catalog LYPLA1 2515 9 0 -5 at_least_one_novel_splicesite FALSE 176 55 1 TRUE NA 248 ccRCC3 107
PB.175982.43 chr15 - 2120 13 novel_not_in_catalog RMDN3 2246 13 -2 0 intron_retention FALSE 176 20 -6 TRUE NA 223 ccRCC3 107
PB.99440.6 chr7 - 2230 11 novel_in_catalog TBRG4 2226 11 -6 -1 intron_retention FALSE 176 10 -21 TRUE NA 231 ccRCC3 107
PB.205956.2 chr19 - 2137 13 novel_in_catalog TEAD2 2175 13 2 0 combination_of_known_junctions FALSE 171 40 11 TRUE NA 247 ccRCC3 105
PB.127830.2 chr9 - 1027 9 novel_not_in_catalog SURF1 1092 9 2 -2 at_least_one_novel_splicesite FALSE 175 40 -12 TRUE NA 233 ccRCC3 104
PB.184109.3 chr16 - 713 6 novel_not_in_catalog NDUFAB1 843 6 2 -8 at_least_one_novel_splicesite FALSE 178 40 -3 TRUE NA 205 ccRCC3 104
PB.179619.1 chr15 - 2552 7 novel_not_in_catalog ADPGK 2608 7 12 -4 at_least_one_novel_splicesite FALSE 151 15 31 TRUE NA 193 ccRCC3 103
PB.212463.1 chr20 - 1821 14 novel_not_in_catalog UCKL1 1838 15 0 2 at_least_one_novel_splicesite FALSE 142 40 -13 TRUE NA 187 ccRCC3 103
PB.30783.3 chr2 - 2678 6 novel_in_catalog RND3 2777 5 2 -4 combination_of_known_junctions FALSE 286 25 0 TRUE NA 382 ccRCC3 103
PB.166864.8 chr13 + 2512 12 novel_not_in_catalog TFDP1 804 7 -19 -8 at_least_one_novel_splicesite FALSE 162 25 -21 TRUE -16 212 ccRCC3 102
PB.110719.8 chr8 + 1228 8 novel_not_in_catalog ADAM9 3929 19 27 32 at_least_one_novel_splicesite FALSE 169 10 6 TRUE -20 178 ccRCC3 101
PB.143726.135 chr11 + 2648 12 novel_not_in_catalog FRMD8 3685 11 0 -3 at_least_one_novel_splicesite FALSE 225 30 -3 TRUE -11 287 ccRCC3 101
PB.191512.13 chr17 + 1682 11 novel_in_catalog GGNBP2 2816 14 -6 -13 combination_of_known_splicesites FALSE 138 80 -29 TRUE NA 194 ccRCC3 100
PB.192378.76 chr17 + 2121 4 novel_in_catalog TMUB2 1580 6 0 -1 intron_retention FALSE 149 5 -12 TRUE -15 195 ccRCC3 100
PB.214827.13 chr21 + 1576 4 novel_not_in_catalog COL6A1 4203 35 -2 0 intron_retention FALSE 328 5 10 TRUE -15 452 ccRCC3 100
PB.2843.4 chr1 + 1686 9 novel_in_catalog ZCCHC17 1568 8 0 -2 combination_of_known_junctions FALSE 145 25 0 TRUE -21 206 ccRCC3 100
PB.167314.9 chr14 - 2464 20 novel_not_in_catalog IPO4 3440 30 -2 0 at_least_one_novel_splicesite FALSE 156 45 -10 TRUE NA 198 ccRCC3 99
PB.69866.14 chr5 + 3050 14 novel_in_catalog MTRR 3245 15 0 -1 intron_retention FALSE 147 30 27 TRUE -24 181 ccRCC3 99
PB.46855.7 chr3 + 2012 9 novel_in_catalog MITF 4799 10 0 0 intron_retention FALSE 186 90 2 TRUE NA 251 ccRCC3 98
PB.105286.1 chr7 - 2419 14 novel_in_catalog IMPDH1 2580 16 -12 0 combination_of_known_junctions FALSE 174 10 -12 TRUE NA 233 ccRCC3 97
PB.116196.1 chr8 - 4068 29 novel_not_in_catalog WASHC5 4139 29 -9 -1 at_least_one_novel_splicesite FALSE 131 20 33 TRUE NA 173 ccRCC3 97
PB.84619.4 chr6 + 1265 6 novel_in_catalog MICA 2014 6 0 0 combination_of_known_junctions FALSE 182 25 -9 TRUE -18 245 ccRCC3 97
PB.88621.6 chr6 + 1668 7 novel_in_catalog SLC35A1 1854 8 3 1 combination_of_known_splicesites FALSE 151 45 -7 TRUE -12 213 ccRCC3 97
PB.95488.1 chr7 - 1268 6 novel_in_catalog ZFAND2A 878 5 -6 -2 combination_of_known_junctions FALSE 140 15 3 TRUE NA 205 ccRCC3 97
PB.221241.4 chrX + 2260 17 novel_in_catalog CDK16 3151 16 2 -2 combination_of_known_junctions FALSE 157 5 -49 TRUE NA 203 ccRCC3 96
PB.112883.2 chr8 - 832 3 novel_in_catalog MRPS28 487 4 -11 1 combination_of_known_splicesites FALSE 146 30 -7 TRUE NA 179 ccRCC3 95
PB.117509.1 chr8 + 2148 5 novel_not_in_catalog KIFC2 3646 17 40 -1 intron_retention FALSE 159 15 20 TRUE -14 211 ccRCC3 95
PB.136230.11 chr10 + 2989 12 novel_in_catalog ZFYVE27 3045 13 19 0 combination_of_known_junctions FALSE 158 5 2 TRUE -16 203 ccRCC3 95
PB.948.1 chr1 - 2758 25 novel_in_catalog EXOSC10 2721 24 17 -3 combination_of_known_junctions FALSE 133 35 17 TRUE NA 170 ccRCC3 95
PB.215078.13 chr22 + 2610 7 novel_not_in_catalog BCL2L13 4959 7 3 -4 at_least_one_novel_splicesite FALSE 140 40 11 TRUE -25 178 ccRCC3 94
PB.26088.6 chr2 + 748 2 novel_in_catalog TMSB10 461 3 -4 -1 intron_retention FALSE 285 10 -3 TRUE -15 417 ccRCC3 94
PB.77751.15 chr5 - 2082 15 novel_in_catalog P4HA2 2230 16 5 0 combination_of_known_junctions FALSE 143 35 -6 TRUE -5 177 ccRCC3 94
PB.150694.5 chr12 + 2374 3 novel_in_catalog CDKN1B 2411 3 7 -1 combination_of_known_splicesites FALSE 128 35 -1 TRUE -17 161 ccRCC3 93
PB.143001.28 chr11 - 1104 13 novel_in_catalog MTCH2 2522 13 0 -9 combination_of_known_junctions FALSE 138 5 -13 TRUE NA 185 ccRCC3 92
PB.204130.165 chr19 - 530 6 novel_in_catalog DMKN 458 6 -40 0 combination_of_known_junctions FALSE 179 5 -4 TRUE NA 230 ccRCC3 92
PB.220744.4 chrX + 606 2 novel_not_in_catalog MID1IP1 4814 2 0 -19 at_least_one_novel_splicesite FALSE 149 75 -8 TRUE -32 183 ccRCC3 92
PB.155120.31 chr12 - 874 6 novel_not_in_catalog TMBIM4 844 6 2 1 at_least_one_novel_splicesite FALSE 121 35 -3 TRUE NA 146 ccRCC3 91
PB.168188.2 chr14 + 613 3 novel_in_catalog FAM177A1 858 6 -27 -37 combination_of_known_junctions FALSE 142 80 -21 TRUE NA 195 ccRCC3 91
PB.192015.5 chr17 + 1381 3 novel_in_catalog EIF1 815 4 -1 3 intron_retention FALSE 143 15 -3 TRUE -17 204 ccRCC3 91
PB.90997.311 chr6 + 3048 5 novel_not_in_catalog HINT3 3325 5 -16 -3 at_least_one_novel_splicesite FALSE 152 20 -18 TRUE -18 186 ccRCC3 91
PB.216381.1 chr22 - 2684 19 novel_in_catalog ASCC2 2790 20 3 -1 combination_of_known_splicesites FALSE 121 30 -11 TRUE NA 168 ccRCC3 90
PB.182025.1 chr15 - 813 7 novel_in_catalog SNRPA1 1052 9 7 0 combination_of_known_junctions FALSE 145 25 -8 TRUE NA 184 ccRCC3 89
PB.216695.2 chr22 - 2618 7 novel_in_catalog PISD 1723 8 -2 0 intron_retention FALSE 122 70 8 TRUE NA 163 ccRCC3 89
PB.100625.654 chr7 - 1645 10 novel_in_catalog NSUN5 2336 10 -34 -2 combination_of_known_junctions FALSE 120 35 -2 TRUE -45 152 ccRCC3 87
PB.190045.56 chr17 - 1547 11 novel_in_catalog COPS3 1814 12 0 -1 combination_of_known_junctions FALSE 134 20 -3 TRUE NA 168 ccRCC3 87
PB.2493.111 chr1 + 1283 4 novel_not_in_catalog TMEM222 1613 6 -14 0 at_least_one_novel_splicesite FALSE 111 10 -38 TRUE -14 146 ccRCC3 87
PB.55914.8 chr3 + 1856 11 novel_in_catalog EIF4A2 1977 12 0 -1 combination_of_known_junctions FALSE 119 20 -2 TRUE -15 175 ccRCC3 87
PB.14813.3 chr1 + 1557 6 novel_not_in_catalog RNPEP 2399 11 -32 -9 at_least_one_novel_splicesite FALSE 134 45 -24 TRUE -11 161 ccRCC3 86
PB.90316.4 chr6 - 2617 13 novel_in_catalog FYN 3628 14 -4 -8 intron_retention FALSE 121 60 -5 TRUE NA 165 ccRCC3 86
PB.103000.3 chr7 + 1860 5 novel_in_catalog MEPCE 2261 5 3 -10 combination_of_known_splicesites FALSE 113 15 1 TRUE -16 172 ccRCC3 85
PB.133096.4 chr10 - 2909 9 novel_in_catalog DNAJB12 2935 9 -30 -2 combination_of_known_junctions FALSE 117 30 -5 TRUE NA 153 ccRCC3 85
PB.4167.2 chr1 + 1616 11 novel_in_catalog DMAP1 1552 11 -1 -4 combination_of_known_junctions FALSE 115 10 -3 TRUE -11 153 ccRCC3 85
PB.172832.5 chr14 + 2061 13 novel_in_catalog TTC8 5270 14 -4 -6 combination_of_known_junctions FALSE 106 30 -16 TRUE -13 141 ccRCC3 84
PB.175878.6 chr15 - 1109 6 novel_in_catalog SRP14 791 6 -5 -45 combination_of_known_junctions FALSE 115 10 1 TRUE NA 161 ccRCC3 84
PB.136199.2 chr10 + 808 3 novel_not_in_catalog ZDHHC16 1519 9 -28 1 at_least_one_novel_splicesite FALSE 111 35 -23 TRUE -14 136 ccRCC3 83
PB.142636.10 chr11 + 579 2 novel_not_in_catalog API5 1760 13 -3 -6 at_least_one_novel_splicesite FALSE 128 15 -36 TRUE -12 141 ccRCC3 82
PB.68919.18 chr7 - 1341 6 novel_not_in_catalog FIS1 1005 5 -2 -4 at_least_one_novel_splicesite FALSE 3869 10 6 TRUE NA 8258 ccRCC2 329
PB.71857.3 chr7 + 497 4 novel_not_in_catalog NDUFB2 465 4 2 1 at_least_one_novel_splicesite FALSE 6738 35 -26 TRUE -26 12955 ccRCC2 329
PB.146764.4 chr21 - 988 5 novel_not_in_catalog ATP5PF 826 4 -5 -1 at_least_one_novel_splicesite FALSE 3376 20 -35 TRUE NA 6846 ccRCC2 325
PB.65392.27 chr7 - 1009 7 novel_not_in_catalog LSM5 649 6 4 2 at_least_one_novel_splicesite FALSE 2122 20 -14 TRUE NA 4014 ccRCC2 318
PB.138270.8 chr19 + 1136 5 novel_in_catalog OAZ1 1148 6 5 -6 intron_retention FALSE 1937 15 0 TRUE -9 3892 ccRCC2 315
PB.105182.37 chr12 - 1246 5 novel_not_in_catalog NDUFA4L2 1186 5 -31 0 at_least_one_novel_splicesite FALSE 4870 20 -11 TRUE NA 10248 ccRCC2 314
PB.149779.1 chr22 + 1896 13 novel_not_in_catalog EIF3L 3220 13 -1 -3 at_least_one_novel_splicesite FALSE 1397 20 -3 TRUE -14 2451 ccRCC2 311
PB.126109.41 chr16 - 1097 4 novel_not_in_catalog VKORC1 1077 4 -16 -2 at_least_one_novel_splicesite FALSE 1694 30 -30 TRUE NA 3586 ccRCC2 291
PB.97670.229 chr11 + 1558 2 novel_not_in_catalog NEAT1 3441 2 0 -24 at_least_one_novel_splicesite ???? 1703 90 0 TRUE NA 3604 ccRCC2 282
PB.100993.275 chr11 - 669 7 novel_not_in_catalog FXYD2 589 6 0 34 at_least_one_novel_splicesite ???? 1240 30 -2 TRUE -7 2597 ccRCC2 269
PB.98665.70 chr11 - 1363 7 novel_not_in_catalog CLNS1A 2982 7 -2 40 at_least_one_novel_splicesite ???? 754 15 -1 TRUE NA 1401 ccRCC2 268
PB.100993.276 chr11 - 690 6 novel_not_in_catalog FXYD2 589 6 0 34 at_least_one_novel_splicesite ???? 800 30 -2 TRUE -7 1758 ccRCC2 251
PB.8738.8 chr1 + 2384 12 novel_in_catalog LMNA 2461 13 7 -1 intron_retention FALSE 977 5 8 TRUE -17 1682 ccRCC2 250
PB.100993.281 chr11 - 821 5 novel_in_catalog FXYD2 589 6 0 34 intron_retention ???? 825 30 -2 TRUE -7 1899 ccRCC2 247
PB.72985.3 chr7 + 1566 8 novel_not_in_catalog DNAJB6 1609 8 2 -1 at_least_one_novel_splicesite FALSE 673 10 -4 TRUE -34 1317 ccRCC2 240
PB.57444.28 chr6 - 3551 10 novel_in_catalog FKBP5 3750 11 0 -13 combination_of_known_splicesites FALSE 672 50 1 TRUE NA 1154 ccRCC2 239
PB.66864.1 chr7 - 2041 11 novel_in_catalog GUSB 2199 12 0 -1 combination_of_known_junctions FALSE 677 45 10 TRUE -37 1219 ccRCC2 235
PB.1741.36 chr1 + 1650 5 novel_not_in_catalog CLIC4 4253 6 1 -5 at_least_one_novel_splicesite FALSE 516 35 24 TRUE -14 943 ccRCC2 231
PB.71445.46 chr7 + 1980 7 novel_not_in_catalog CALD1 2124 12 -11 -4 at_least_one_novel_splicesite FALSE 644 25 -13 TRUE -17 1092 ccRCC2 227
PB.15309.1 chr2 + 1668 8 novel_not_in_catalog KHK 2411 8 1 37 intron_retention FALSE 1058 15 -24 TRUE NA 2049 ccRCC2 225
PB.97439.2 chr11 - 2589 15 novel_in_catalog GANAB 3836 23 0 0 combination_of_known_splicesites ???? 483 30 -4 TRUE NA 1087 ccRCC2 224
PB.148415.1 chr22 - 2103 8 novel_in_catalog SLC25A1 1548 9 -30 0 intron_retention FALSE 518 0 5 TRUE NA 938 ccRCC2 217
PB.93981.72 chr10 + 3782 13 novel_in_catalog PLEKHA1 3771 13 -2 -2 combination_of_known_junctions FALSE 549 20 -20 TRUE -13 966 ccRCC2 215
PB.19803.105 chr2 - 1527 6 novel_in_catalog FHL2 1582 7 0 -2 combination_of_known_junctions FALSE 597 30 -4 TRUE NA 1153 ccRCC2 209
PB.2756.11 chr1 + 2627 13 novel_in_catalog CAP1 3105 13 -15 -2 combination_of_known_junctions FALSE 464 10 0 TRUE -15 798 ccRCC2 208
PB.138875.210 chr19 + 1955 6 novel_in_catalog ANGPTL4 1872 7 1 -4 intron_retention FALSE 825 15 1 TRUE -12 1368 ccRCC2 206
PB.8199.60 chr1 - 3564 2 novel_not_in_catalog MCL1 4524 2 -2 -1 intron_retention FALSE 492 25 4 TRUE NA 847 ccRCC2 206
PB.138149.3 chr19 + 1750 7 novel_in_catalog CIRBP 571 6 -17 -7 combination_of_known_splicesites FALSE 414 35 -1 TRUE -11 720 ccRCC2 203
PB.138875.213 chr19 + 1928 7 novel_not_in_catalog ANGPTL4 1719 8 0 3 intron_retention FALSE 790 0 0 TRUE -19 1429 ccRCC2 200
PB.57163.31 chr6 + 1120 5 novel_in_catalog SNHG32 962 5 5 -3 combination_of_known_junctions FALSE 399 30 17 TRUE -13 813 ccRCC2 197
PB.97299.1 chr11 - 4214 27 novel_not_in_catalog DDB1 4245 27 13 3 at_least_one_novel_splicesite ???? 433 45 27 TRUE NA 788 ccRCC2 197
PB.26451.2 chr2 - 1213 4 novel_not_in_catalog SERPINE2 2226 9 0 -21 at_least_one_novel_splicesite FALSE 574 50 -1 TRUE -24 862 ccRCC2 193
PB.149738.3 chr22 + 360 3 novel_in_catalog LGALS1 528 4 0 4 combination_of_known_splicesites FALSE 465 0 -2 TRUE -30 694 ccRCC2 191
PB.26451.6 chr2 - 1856 8 novel_in_catalog SERPINE2 2226 9 0 19 combination_of_known_splicesites FALSE 541 65 -1 TRUE -24 1128 ccRCC2 188
PB.100993.290 chr11 - 805 7 novel_not_in_catalog FXYD2 991 6 0 28 at_least_one_novel_splicesite ???? 414 45 -2 TRUE -7 875 ccRCC2 187
PB.153469.20 chrX + 2674 14 novel_not_in_catalog MSN 3960 13 0 -1 at_least_one_novel_splicesite FALSE 403 25 0 TRUE -16 720 ccRCC2 187
PB.19755.37 chr2 + 1421 2 novel_not_in_catalog POU3F3 4401 4 13 -5 at_least_one_novel_splicesite FALSE 339 25 7 TRUE -11 722 ccRCC2 183
PB.138467.1 chr19 - 3005 9 novel_in_catalog SH3GL1 2516 10 26 5 intron_retention FALSE 331 5 5 TRUE NA 587 ccRCC2 181
PB.124109.9 chr16 + 3079 13 novel_not_in_catalog FAM234A 2909 13 -6 7 at_least_one_novel_splicesite FALSE 316 15 -22 TRUE -30 601 ccRCC2 180
PB.96892.2 chr11 - 3254 12 novel_in_catalog ARHGAP1 3395 13 1 -4 combination_of_known_junctions ???? 405 30 -14 TRUE NA 717 ccRCC2 180
PB.132134.31 chr17 + 3005 10 novel_not_in_catalog ITGA3 5479 24 26 2 intron_retention FALSE 455 15 0 TRUE -19 845 ccRCC2 174
PB.32139.1 chr3 + 1808 8 novel_in_catalog TFG 1888 9 7 0 combination_of_known_junctions FALSE 330 25 0 TRUE -14 604 ccRCC2 174
PB.118420.1 chr14 - 1418 8 novel_in_catalog CKB 1239 8 0 -1 combination_of_known_junctions FALSE 1254 5 1 TRUE NA 2266 ccRCC2 172
PB.147630.127 chr21 + 2839 13 novel_in_catalog TTC3 7712 46 0 -6 combination_of_known_splicesites FALSE 339 40 13 TRUE -10 693 ccRCC2 170
PB.78134.3 chr8 + 588 5 novel_in_catalog ENY2 562 5 0 21 combination_of_known_junctions FALSE 300 20 -30 TRUE -43 601 ccRCC2 169
PB.46811.75 chr5 + 1737 4 novel_not_in_catalog CDH6 2569 11 -28 -2 at_least_one_novel_splicesite FALSE 337 20 -2 TRUE -14 566 ccRCC2 166
PB.1457.1 chr1 - 3192 7 novel_in_catalog HP1BP3 6406 13 13 3 intron_retention FALSE 314 35 13 TRUE NA 533 ccRCC2 164
PB.102304.1 chr12 - 1767 8 novel_in_catalog MLF2 1555 9 3 17 intron_retention FALSE 292 10 -7 TRUE NA 494 ccRCC2 162
PB.18768.26 chr2 + 752 2 novel_in_catalog TMSB10 461 3 -3 4 intron_retention FALSE 339 5 -2 TRUE -20 683 ccRCC2 162
PB.44869.1 chr4 - 2692 7 novel_not_in_catalog PDGFC 2987 7 -33 -4 intron_retention FALSE 280 25 -29 TRUE NA 500 ccRCC2 162
PB.138698.25 chr19 - 2955 11 novel_in_catalog SLC25A23 3482 10 -8 0 combination_of_known_junctions FALSE 317 25 20 TRUE NA 545 ccRCC2 161
PB.139329.3 chr19 + 1683 10 novel_in_catalog CALR 1901 9 -4 1 intron_retention FALSE 318 0 -4 TRUE -18 434 ccRCC2 159
PB.148780.1 chr22 - 2818 5 novel_not_in_catalog GUCD1 895 5 11 1 at_least_one_novel_splicesite FALSE 255 20 29 TRUE NA 475 ccRCC2 159
PB.142950.19 chr20 + 1128 3 novel_in_catalog MRPS26 1016 4 -21 -1 intron_retention FALSE 264 30 4 TRUE -16 590 ccRCC2 155
PB.108697.11 chr12 + 2428 6 novel_in_catalog MLEC 6341 5 -14 -5 combination_of_known_junctions FALSE 308 15 -17 TRUE -11 552 ccRCC2 154
PB.129274.61 chr17 + 2477 10 novel_not_in_catalog POLR2A 6751 29 0 -7 at_least_one_novel_splicesite FALSE 272 45 0 TRUE -15 463 ccRCC2 154
PB.142723.10 chr19 - 2574 7 novel_in_catalog ZSCAN18 2539 7 -25 0 combination_of_known_junctions FALSE 264 25 -21 TRUE NA 505 ccRCC2 154
PB.145710.117 chr20 - 1073 9 novel_in_catalog DPM1 1097 9 0 1 combination_of_known_junctions FALSE 262 20 -1 TRUE NA 464 ccRCC2 154
PB.20328.237 chr2 - 1834 12 novel_in_catalog PAX8 4036 12 0 31 combination_of_known_junctions FALSE 273 30 -2 TRUE NA 472 ccRCC2 149
PB.65392.17 chr7 - 1242 7 novel_not_in_catalog LSM5 740 5 0 -4 at_least_one_novel_splicesite FALSE 251 20 -18 TRUE NA 509 ccRCC2 149
PB.128995.2 chr17 + 1475 10 novel_in_catalog RNF167 1728 11 4 -2 combination_of_known_junctions FALSE 235 40 1 TRUE -19 460 ccRCC2 148
PB.53546.34 chr5 - 2441 10 novel_in_catalog CSNK1A1 5444 11 0 -21 combination_of_known_junctions FALSE 225 30 -7 TRUE NA 384 ccRCC2 147
PB.93267.2 chr10 - 2539 21 novel_in_catalog XPNPEP1 2467 20 0 0 combination_of_known_junctions FALSE 243 5 -1 TRUE NA 380 ccRCC2 146
PB.100830.44 chr11 + 1063 3 novel_in_catalog NNMT 2012 3 -36 0 combination_of_known_junctions ???? 295 15 -23 TRUE -19 649 ccRCC2 144
PB.95595.2 chr11 - 3354 22 novel_in_catalog COPB1 3481 22 -3 -1 combination_of_known_junctions ???? 267 30 -13 TRUE NA 437 ccRCC2 144
PB.126110.46 chr16 + 2319 7 novel_not_in_catalog HSD3B7 2171 7 11 0 at_least_one_novel_splicesite FALSE 275 10 17 TRUE -14 439 ccRCC2 141
PB.96947.343 chr11 + 1760 11 novel_not_in_catalog DDB2 1815 10 -8 -1 at_least_one_novel_splicesite ???? 256 10 3 TRUE -13 493 ccRCC2 140
PB.100993.274 chr11 - 801 7 novel_not_in_catalog FXYD2 991 6 37 -2 at_least_one_novel_splicesite ???? 225 30 2 TRUE NA 337 ccRCC2 139
PB.129195.38 chr17 + 1099 8 novel_in_catalog RNASEK-C17orf49 1662 8 -9 0 combination_of_known_junctions FALSE 237 10 -11 TRUE -14 438 ccRCC2 139
PB.19016.7 chr2 - 1732 4 novel_not_in_catalog KRCC1 1807 4 11 -3 at_least_one_novel_splicesite FALSE 216 15 1 TRUE NA 425 ccRCC2 139
PB.53624.10 chr5 - 3773 14 novel_in_catalog DCTN4 1737 14 1 -8 combination_of_known_junctions FALSE 218 20 6 TRUE -20 381 ccRCC2 132
PB.130354.3 chr17 - 2478 10 novel_in_catalog FLOT2 2668 11 -8 0 combination_of_known_splicesites FALSE 209 5 10 TRUE NA 380 ccRCC2 130
PB.133339.1 chr17 + 1993 11 novel_in_catalog KPNA2 1973 11 0 1 combination_of_known_junctions FALSE 245 20 -1 TRUE -19 444 ccRCC2 130
PB.140586.18 chr19 + 3335 4 novel_not_in_catalog ZNF146 3347 4 0 -5 at_least_one_novel_splicesite FALSE 178 35 -2 TRUE -15 298 ccRCC2 130
PB.21084.1 chr2 - 2633 3 novel_not_in_catalog FAM168B 5435 7 15 -1 at_least_one_novel_splicesite FALSE 204 20 -10 TRUE NA 343 ccRCC2 130
PB.55255.1 chr6 - 1504 8 novel_not_in_catalog SERPINB6 1375 7 0 27 at_least_one_novel_splicesite FALSE 239 25 1 TRUE NA 434 ccRCC2 130
PB.86884.15 chr10 + 1308 5 novel_not_in_catalog PFKFB3 4157 15 -6 -1 at_least_one_novel_splicesite FALSE 265 35 6 TRUE -18 562 ccRCC2 128
PB.120318.142 chr15 + 1798 11 novel_in_catalog SQOR 1792 11 0 1 combination_of_known_junctions FALSE 224 30 0 TRUE -45 433 ccRCC2 127
PB.40092.17 chr4 - 4026 5 novel_in_catalog SGCB 4248 6 12 0 combination_of_known_splicesites FALSE 213 20 -4 TRUE NA 413 ccRCC2 127
PB.132167.1 chr17 + 2462 9 novel_not_in_catalog RSAD1 2467 9 3 -4 at_least_one_novel_splicesite FALSE 197 5 5 TRUE -12 345 ccRCC2 126
PB.149835.57 chr22 - 1666 11 novel_not_in_catalog CSNK1E 2817 11 -37 8 at_least_one_novel_splicesite FALSE 217 80 -10 TRUE NA 460 ccRCC2 126
PB.138119.377 chr19 + 1598 7 novel_in_catalog GPX4 851 7 5 -1 combination_of_known_junctions FALSE 239 10 -7 TRUE -21 476 ccRCC2 125
PB.106411.182 chr12 - 1458 16 novel_in_catalog NAP1L1 1896 16 0 11 combination_of_known_junctions FALSE 195 35 -5 TRUE NA 362 ccRCC2 124
PB.147630.9 chr21 + 2850 24 novel_in_catalog TTC3 3626 32 -19 0 combination_of_known_junctions FALSE 198 80 0 TRUE NA 398 ccRCC2 123
PB.55026.10 chr5 - 1132 8 novel_in_catalog RACK1 1150 8 1 -1 combination_of_known_junctions FALSE 209 10 -9 TRUE NA 414 ccRCC2 123
PB.133822.15 chr17 + 2435 3 novel_in_catalog SNHG16 2536 4 0 -1 intron_retention FALSE 176 30 -4 TRUE -18 342 ccRCC2 121
PB.97569.9 chr11 + 1603 6 novel_in_catalog FKBP2 574 6 0 -23 combination_of_known_splicesites ???? 186 80 11 TRUE NA 389 ccRCC2 121
PB.33439.44 chr3 - 3090 9 novel_not_in_catalog ZNF148 9514 9 -4 -2 intron_retention FALSE 189 75 2 TRUE NA 398 ccRCC2 120
PB.139011.20 chr19 - 3569 12 novel_in_catalog RAVER1 3484 13 1 0 intron_retention FALSE 175 25 -4 TRUE NA 289 ccRCC2 119
PB.142386.8 chr19 + 3459 15 novel_not_in_catalog LENG8 3658 16 -12 21 intron_retention FALSE 217 0 -2 TRUE -37 431 ccRCC2 119
PB.19755.16 chr2 + 710 4 novel_not_in_catalog POU3F3 4401 4 -23 -4 at_least_one_novel_splicesite FALSE 179 25 -29 TRUE -12 220 ccRCC2 119
PB.71020.7 chr7 - 1636 8 novel_in_catalog ZC3HC1 1889 10 -1 -5 combination_of_known_junctions FALSE 185 25 -12 TRUE NA 369 ccRCC2 119
PB.72430.14 chr7 + 3833 17 novel_in_catalog KRBA1 3827 17 0 -3 combination_of_known_splicesites FALSE 200 25 -6 TRUE -13 378 ccRCC2 119
PB.149178.2 chr22 + 2222 17 novel_in_catalog EWSR1 2207 17 7 -1 combination_of_known_junctions FALSE 189 10 -23 TRUE -15 347 ccRCC2 118
PB.2248.35 chr1 - 1965 5 novel_in_catalog PTP4A2 3910 6 9 9 intron_retention FALSE 180 90 -10 TRUE NA 337 ccRCC2 117
PB.98419.20 chr11 + 2475 14 novel_not_in_catalog PPME1 2487 14 13 -2 at_least_one_novel_splicesite ???? 176 5 -16 TRUE -14 338 ccRCC2 117
PB.100993.284 chr11 - 813 6 novel_not_in_catalog FXYD2 589 6 0 28 at_least_one_novel_splicesite ???? 172 45 2 TRUE -3 361 ccRCC2 116
PB.150316.3 chr22 - 3080 10 novel_in_catalog PACSIN2 3251 11 -7 0 combination_of_known_splicesites FALSE 169 20 -12 TRUE NA 296 ccRCC2 116
PB.102960.1 chr12 - 2696 10 novel_not_in_catalog EPS8 3873 21 0 -1 at_least_one_novel_splicesite FALSE 190 25 4 TRUE NA 369 ccRCC2 115
PB.66397.4 chr7 + 1178 7 novel_not_in_catalog UPP1 1013 7 -19 0 at_least_one_novel_splicesite FALSE 287 25 4 TRUE -11 579 ccRCC2 115
PB.46163.33 chr5 + 2971 13 novel_in_catalog MTRR 3245 15 0 -1 intron_retention FALSE 173 30 17 TRUE -24 287 ccRCC2 114
PB.68418.25 chr7 + 3786 18 novel_not_in_catalog CASD1 3931 18 5 -5 at_least_one_novel_splicesite FALSE 166 40 -26 TRUE -19 292 ccRCC2 114
PB.114401.4 chr14 + 644 3 novel_in_catalog FAM177A1 858 6 -13 8 combination_of_known_junctions FALSE 168 35 -7 TRUE -35 349 ccRCC2 113
PB.138119.54 chr19 + 3446 2 novel_in_catalog KISS1R 1624 5 1 -43 intron_retention FALSE 188 20 0 TRUE -14 380 ccRCC2 112
PB.138881.114 chr19 + 2472 15 novel_not_in_catalog HNRNPM 2458 15 -1 0 intron_retention FALSE 158 20 -6 TRUE -13 262 ccRCC2 112
PB.50132.306 chr5 + 2788 28 novel_in_catalog CAST 4282 29 0 0 combination_of_known_junctions FALSE 176 30 13 TRUE -37 346 ccRCC2 112
PB.51588.5 chr5 + 2629 24 novel_in_catalog HSD17B4 2881 25 0 1 combination_of_known_junctions FALSE 158 5 -27 TRUE -18 265 ccRCC2 111
PB.92423.6 chr10 + 2822 11 novel_not_in_catalog SFXN3 3098 12 0 0 at_least_one_novel_splicesite FALSE 182 15 -36 TRUE -15 325 ccRCC2 111
PB.102263.17 chr12 + 568 7 novel_not_in_catalog GAPDH 1285 9 0 -1 at_least_one_novel_splicesite FALSE 156 15 -2 TRUE -18 284 ccRCC2 110
PB.148399.3 chr22 + 878 4 novel_in_catalog DGCR5 1299 6 4 1 combination_of_known_junctions FALSE 179 25 -1 TRUE -17 373 ccRCC2 110
PB.61618.2 chr6 - 2794 7 novel_in_catalog PLAGL1 3663 9 -1 0 combination_of_known_junctions FALSE 172 25 -5 TRUE NA 318 ccRCC2 110
PB.65338.41 chr7 - 1042 3 novel_in_catalog GGCT 1158 4 -20 0 combination_of_known_junctions FALSE 182 30 -2 TRUE NA 382 ccRCC2 110
PB.68825.4 chr7 + 1873 5 novel_in_catalog MEPCE 2261 5 0 0 combination_of_known_splicesites FALSE 169 15 -2 TRUE -26 405 ccRCC2 110
PB.73592.1 chr8 + 2119 9 novel_in_catalog FDFT1 2368 9 6 0 combination_of_known_junctions FALSE 164 30 2 TRUE -21 306 ccRCC2 110
PB.152106.35 chrX + 1164 3 novel_not_in_catalog EIF2S3 773 5 -1 -7 at_least_one_novel_splicesite FALSE 149 45 4 TRUE -14 294 ccRCC2 109
PB.35093.16 chr3 + 4512 8 novel_in_catalog MBNL1 5516 10 0 -4 combination_of_known_junctions FALSE 149 30 -4 TRUE -33 259 ccRCC2 109
PB.136089.17 chr18 - 2177 9 novel_in_catalog SLC39A6 3566 10 -8 -27 combination_of_known_junctions ???? 149 70 -32 TRUE NA 285 ccRCC2 107
PB.36827.2 chr3 + 3123 19 novel_in_catalog EIF4G1 5405 33 -9 0 combination_of_known_junctions FALSE 165 70 -44 TRUE NA 338 ccRCC2 106
PB.97759.4 chr11 + 729 2 novel_not_in_catalog RAB1B 1901 6 1 -2 intron_retention ???? 155 20 -2 TRUE -41 329 ccRCC2 106
PB.140524.46 chr19 + 1292 12 novel_not_in_catalog ENSG00000188223 1037 11 -27 -1 at_least_one_novel_splicesite FALSE 134 5 14 TRUE -17 286 ccRCC2 105
PB.63735.7 chr7 + 1439 9 novel_in_catalog ZDHHC4 1552 8 1 -1 combination_of_known_junctions FALSE 148 10 2 TRUE NA 313 ccRCC2 103
PB.134592.4 chr18 + 1387 3 novel_not_in_catalog TGIF1 801 3 -25 -1 at_least_one_novel_splicesite ???? 170 40 4 TRUE -11 269 ccRCC2 102
PB.14310.7 chr2 - 1593 7 novel_in_catalog ITGB1BP1 4859 8 4 23 combination_of_known_junctions FALSE 147 35 -16 TRUE NA 269 ccRCC2 102
PB.36835.10 chr3 + 1834 6 novel_in_catalog POLR2H 1807 6 21 -3 combination_of_known_junctions FALSE 139 10 -7 TRUE -26 292 ccRCC2 101
PB.131610.1 chr11 - 2258 9 novel_in_catalog HSPA8 2306 9 0 1 combination_of_known_junctions FALSE 13720 25 -1 TRUE NA 17339 Normal 387
PB.101881.20 chr8 - 2864 15 novel_not_in_catalog PABPC1 2861 15 0 0 intron_retention FALSE 8354 15 -1 TRUE NA 10769 Normal 384
PB.170240.13 chr17 + 1378 2 novel_not_in_catalog ITGA3 1817 14 -1 3 at_least_one_novel_splicesite FALSE 5351 15 -9 TRUE -20 6721 Normal 374
PB.69689.6 chr5 - 1946 9 novel_in_catalog MACROH2A1 1917 9 -25 0 combination_of_known_junctions FALSE 2351 10 -4 TRUE NA 2933 Normal 373
PB.80357.3 chr6 - 1291 3 novel_not_in_catalog CD24 2513 3 -1 10 at_least_one_novel_splicesite FALSE 8784 25 -3 TRUE NA 10330 Normal 372
PB.177716.103 chr19 - 486 2 novel_not_in_catalog EEF2 3158 15 -2 13 at_least_one_novel_splicesite FALSE 2607 10 -3 TRUE NA 3003 Normal 367
PB.146734.99 chr13 + 1183 5 novel_not_in_catalog COL4A2 6446 48 0 -3 at_least_one_novel_splicesite FALSE 3676 25 -1 TRUE -21 4661 Normal 366
PB.151161.1 chr14 + 711 7 novel_in_catalog SRSF5 1638 8 -1 -3 combination_of_known_junctions FALSE 1783 30 -18 TRUE -43 2419 Normal 356
PB.177543.229 chr19 + 1142 5 novel_in_catalog OAZ1 1148 6 4 -1 intron_retention FALSE 3055 10 -1 TRUE -14 3839 Normal 352
PB.49428.1 chr3 + 1458 6 novel_in_catalog POLR2H 1807 6 -2 0 combination_of_known_splicesites FALSE 1687 5 -43 TRUE -31 2163 Normal 348
PB.72163.3 chr5 - 1170 5 novel_in_catalog CLTB 1139 6 -39 46 combination_of_known_junctions FALSE 2504 15 -2 TRUE NA 3183 Normal 347
PB.39961.1 chr3 + 2517 20 novel_in_catalog APEH 2879 22 -33 7 combination_of_known_splicesites FALSE 1511 10 -10 TRUE -20 1909 Normal 337
PB.32340.4 chr2 + 2258 12 novel_not_in_catalog SPATS2L 2648 13 0 0 at_least_one_novel_splicesite FALSE 1961 15 -4 TRUE -15 2502 Normal 336
PB.127705.87 chr11 + 1482 4 novel_not_in_catalog CCND1 4238 5 0 -1 at_least_one_novel_splicesite FALSE 2959 5 0 TRUE -15 3884 Normal 327
PB.194407.28 chrX + 1792 5 novel_not_in_catalog DDX3X 4698 16 -1 2 at_least_one_novel_splicesite FALSE 1191 10 -1 TRUE -21 1461 Normal 325
PB.45425.12 chr3 + 2790 5 novel_not_in_catalog SEC61A1 3568 12 -30 -1 at_least_one_novel_splicesite FALSE 1034 20 -36 TRUE -19 1329 Normal 318
PB.96635.4 chr8 + 2317 10 novel_in_catalog FDFT1 2368 9 6 0 combination_of_known_junctions FALSE 1354 30 2 TRUE -21 1707 Normal 314
PB.69562.98 chr5 - 1018 6 novel_in_catalog SKP1 9386 6 0 2 combination_of_known_junctions FALSE 1166 0 2 TRUE NA 1464 Normal 307
PB.131236.519 chr11 - 969 6 novel_not_in_catalog FXYD2 589 6 0 2 at_least_one_novel_splicesite FALSE 2122 20 2 TRUE -3 2472 Normal 302
PB.91293.13 chr7 - 1637 9 novel_in_catalog PON2 1610 9 0 2 combination_of_known_junctions FALSE 1061 10 -25 TRUE NA 1296 Normal 301
PB.30327.9 chr2 + 2617 17 novel_in_catalog DYNC1I2 4354 18 -30 0 combination_of_known_junctions FALSE 755 30 4 TRUE -15 942 Normal 287
PB.185999.158 chr20 - 1094 9 novel_in_catalog DPM1 1097 9 0 19 combination_of_known_junctions FALSE 684 30 -1 TRUE NA 842 Normal 285
PB.136112.126 chr12 + 1408 12 novel_not_in_catalog PCBP2 1730 14 0 23 at_least_one_novel_splicesite FALSE 827 15 -1 TRUE -10 1127 Normal 279
PB.172866.1 chr17 - 1860 14 novel_in_catalog DUS1L 2233 14 0 0 combination_of_known_junctions FALSE 707 25 -1 TRUE NA 862 Normal 277
PB.135788.2 chr12 + 947 10 novel_not_in_catalog TMBIM6 2837 10 0 -22 at_least_one_novel_splicesite FALSE 849 10 0 TRUE -2 1047 Normal 276
PB.24490.12 chr2 + 746 2 novel_in_catalog TMSB10 461 3 -4 -3 intron_retention FALSE 1472 10 -3 TRUE -13 1989 Normal 275
PB.67557.21 chr5 + 3491 24 novel_in_catalog PAM 3649 25 -21 -2 combination_of_known_junctions FALSE 872 20 -26 TRUE -13 1085 Normal 275
PB.140984.22 chr12 + 2422 6 novel_in_catalog MLEC 6341 5 -4 -1 combination_of_known_junctions FALSE 700 15 -7 TRUE -15 874 Normal 274
PB.177426.15 chr19 - 2656 11 novel_in_catalog TMEM259 2687 11 -19 0 intron_retention FALSE 742 5 -10 TRUE NA 931 Normal 274
PB.87966.2 chr7 - 1038 3 novel_in_catalog GGCT 1158 4 -17 -1 combination_of_known_junctions FALSE 727 25 1 TRUE NA 938 Normal 273
PB.90106.248 chr7 + 2702 15 novel_not_in_catalog GTF2I 4415 34 -16 -1 at_least_one_novel_splicesite FALSE 688 15 -43 TRUE -24 858 Normal 268
PB.191409.188 chr22 - 3113 10 novel_in_catalog PACSIN2 3251 11 0 -1 combination_of_known_splicesites FALSE 862 25 -20 TRUE NA 1073 Normal 267
PB.186656.32 chr20 + 1213 3 novel_in_catalog PPDPF 827 4 0 -3 intron_retention FALSE 2009 30 -5 TRUE NA 2681 Normal 263
PB.3398.464 chr1 + 2133 15 novel_not_in_catalog MACF1 6545 36 -7 3 at_least_one_novel_splicesite FALSE 713 25 -15 TRUE -16 864 Normal 262
PB.120629.6 chr10 - 1246 5 novel_not_in_catalog ALDH18A1 3352 18 26 3 at_least_one_novel_splicesite FALSE 540 15 19 TRUE NA 663 Normal 261
PB.182440.24 chr20 - 1326 3 novel_in_catalog TMEM230 1541 5 0 4 combination_of_known_splicesites FALSE 615 30 13 TRUE NA 765 Normal 260
PB.75765.1 chr6 + 3698 18 novel_in_catalog DDR1 3942 21 0 0 combination_of_known_junctions FALSE 710 15 -14 TRUE -16 877 Normal 259
PB.180903.359 chr19 + 1913 9 novel_in_catalog SAE1 2522 9 -2 -1 combination_of_known_junctions FALSE 586 5 -33 TRUE -15 742 Normal 258
PB.65.2 chr1 + 688 3 novel_not_in_catalog AGRN 7326 36 -16 -2 at_least_one_novel_splicesite FALSE 646 25 5 TRUE -12 720 Normal 257
PB.140223.15 chr12 - 1117 4 novel_not_in_catalog VPS29 1531 4 -20 -3 at_least_one_novel_splicesite FALSE 518 20 -33 TRUE NA 671 Normal 254
PB.164543.31 chr16 + 690 2 novel_not_in_catalog CDH1 4811 16 0 -3 at_least_one_novel_splicesite FALSE 1345 35 0 TRUE -11 1717 Normal 254
PB.165985.21 chr16 + 1597 6 novel_not_in_catalog USP10 3328 14 0 -5 at_least_one_novel_splicesite FALSE 550 15 5 TRUE -16 681 Normal 253
PB.75742.8 chr6 - 1548 10 novel_in_catalog FLOT1 1866 13 -1 -27 combination_of_known_splicesites FALSE 588 55 0 TRUE NA 739 Normal 251
PB.124913.4 chr11 - 3351 22 novel_in_catalog COPB1 3481 22 -2 -3 combination_of_known_junctions FALSE 451 30 -12 TRUE NA 583 Normal 250
PB.185045.1 chr20 + 1326 4 novel_in_catalog MANBAL 1539 5 -16 -4 combination_of_known_splicesites FALSE 537 15 -16 TRUE -17 675 Normal 248
PB.39920.3 chr3 - 1742 6 novel_in_catalog IP6K2 1746 6 0 -1 combination_of_known_junctions FALSE 540 20 -16 TRUE NA 668 Normal 248
PB.162121.97 chr16 + 2968 12 novel_not_in_catalog PDXDC1 3775 22 -5 -3 at_least_one_novel_splicesite FALSE 496 30 1 TRUE -15 596 Normal 245
PB.191939.1 chr22 - 2592 14 novel_not_in_catalog LMF2 2593 14 0 -3 at_least_one_novel_splicesite FALSE 537 0 -4 TRUE NA 653 Normal 244
PB.121680.2 chr10 - 2539 21 novel_in_catalog XPNPEP1 2467 20 0 0 combination_of_known_junctions FALSE 484 5 -1 TRUE NA 601 Normal 243
PB.113602.18 chr9 + 3151 19 novel_not_in_catalog FUBP3 3153 19 -1 0 at_least_one_novel_splicesite FALSE 467 0 -19 TRUE -31 580 Normal 238
PB.179692.316 chr19 - 476 5 novel_in_catalog DMKN 582 8 -36 1 combination_of_known_junctions FALSE 563 5 0 TRUE NA 689 Normal 233
PB.194269.36 chrX + 2390 3 novel_not_in_catalog PRRG1 4400 4 -34 0 at_least_one_novel_splicesite FALSE 807 15 -3 TRUE -18 991 Normal 233
PB.179692.315 chr19 - 525 6 novel_in_catalog DMKN 582 8 -34 1 combination_of_known_junctions FALSE 527 5 2 TRUE NA 664 Normal 232
PB.109610.112 chr9 - 2124 16 novel_not_in_catalog HNRNPK 2928 17 -14 -1 at_least_one_novel_splicesite FALSE 425 10 -19 TRUE NA 516 Normal 230
PB.184275.25 chr20 + 912 4 novel_in_catalog XRN2 3408 30 -13 0 combination_of_known_splicesites FALSE 508 5 -19 TRUE -19 633 Normal 229
PB.185825.19 chr20 - 3178 13 novel_in_catalog STAU1 3334 14 -3 -3 combination_of_known_junctions FALSE 429 30 2 TRUE NA 529 Normal 228
PB.114662.62 chr10 + 3481 8 novel_in_catalog NET1 3253 10 0 -25 intron_retention FALSE 537 80 -3 TRUE -42 704 Normal 227
PB.138881.6 chr12 + 2923 12 novel_in_catalog VEZT 2362 12 2 -21 combination_of_known_junctions FALSE 482 65 2 TRUE NA 624 Normal 226
PB.63940.12 chr5 - 2783 14 novel_not_in_catalog PLK2 2792 15 2 0 intron_retention FALSE 694 30 0 TRUE NA 848 Normal 226
PB.72189.31 chr5 + 1741 7 novel_not_in_catalog FAF2 4485 11 -11 -11 at_least_one_novel_splicesite FALSE 430 45 -13 TRUE -11 544 Normal 225
PB.26104.9 chr2 - 2210 7 novel_in_catalog SEPTIN10 2719 10 0 -2 combination_of_known_splicesites FALSE 447 30 10 TRUE NA 551 Normal 222
PB.118247.558 chr10 + 1496 5 novel_not_in_catalog DDX21 3228 14 -1 -2 at_least_one_novel_splicesite FALSE 455 10 -4 TRUE -14 548 Normal 221
PB.137915.200 chr12 - 1458 16 novel_in_catalog NAP1L1 1896 16 0 12 combination_of_known_junctions FALSE 482 35 -4 TRUE NA 609 Normal 221
PB.131236.518 chr11 - 815 5 novel_in_catalog FXYD2 589 6 0 28 intron_retention FALSE 618 45 -2 TRUE -7 852 Normal 218
PB.58095.6 chr4 + 3265 3 novel_in_catalog SPRY1 2608 3 0 0 combination_of_known_junctions FALSE 464 15 -14 TRUE -19 592 Normal 218
PB.6368.32 chr1 + 2369 13 novel_in_catalog SRSF11 3784 13 -5 -13 combination_of_known_junctions FALSE 427 80 -1 TRUE NA 548 Normal 215
PB.11135.6 chr1 - 1005 6 novel_in_catalog MRPL24 883 6 0 0 combination_of_known_junctions FALSE 394 10 2 TRUE NA 471 Normal 214
PB.67105.62 chr5 + 3049 29 novel_in_catalog CAST 4506 30 2 0 combination_of_known_junctions FALSE 433 30 9 TRUE -37 558 Normal 213
PB.67105.11 chr5 + 744 9 novel_in_catalog CAST 2539 32 0 9 combination_of_known_junctions FALSE 415 40 -1 TRUE NA 576 Normal 210
PB.41697.4 chr3 - 1158 8 novel_not_in_catalog THOC7 892 8 -3 0 at_least_one_novel_splicesite FALSE 370 25 33 TRUE NA 463 Normal 209
PB.138682.2 chr12 + 2025 6 novel_in_catalog MRPL42 725 7 -24 3 combination_of_known_junctions FALSE 345 15 -5 TRUE -40 429 Normal 205
PB.141459.6 chr12 + 1795 4 novel_not_in_catalog AACS 3256 18 0 -3 at_least_one_novel_splicesite FALSE 422 15 -4 TRUE -20 529 Normal 203
PB.177278.18 chr18 - 1060 4 novel_in_catalog TXNL4A 988 5 -14 1 combination_of_known_junctions FALSE 412 10 -33 TRUE NA 536 Normal 203
PB.20244.98 chr2 - 3545 19 novel_not_in_catalog GTF3C2 3882 19 4 -2 at_least_one_novel_splicesite FALSE 355 30 5 TRUE NA 458 Normal 203
PB.118247.17 chr10 + 867 7 novel_not_in_catalog CCAR1 3224 22 -4 0 at_least_one_novel_splicesite FALSE 380 55 -18 TRUE -37 536 Normal 202
PB.11853.5 chr1 - 1843 3 novel_in_catalog CREG1 1969 4 4 -2 combination_of_known_splicesites FALSE 339 15 4 TRUE NA 413 Normal 202
PB.181187.68 chr19 + 1350 13 novel_in_catalog PTOV1 1438 13 -7 0 combination_of_known_junctions FALSE 339 5 13 TRUE -17 440 Normal 202
PB.136262.258 chr12 - 1415 4 novel_in_catalog PYM1 890 4 -15 1 combination_of_known_junctions FALSE 338 5 -10 TRUE NA 429 Normal 199
PB.39986.5 chr3 + 3104 25 novel_not_in_catalog RBM5 3177 25 0 0 at_least_one_novel_splicesite FALSE 347 15 -22 TRUE -10 412 Normal 199
PB.140223.50 chr12 - 876 4 novel_not_in_catalog VPS29 1531 4 -16 -35 at_least_one_novel_splicesite FALSE 403 40 -29 TRUE NA 545 Normal 197
PB.89993.388 chr7 + 2482 14 novel_not_in_catalog GTF2IP4 3609 24 -2 11 at_least_one_novel_splicesite FALSE 351 15 -4 TRUE -25 451 Normal 197
PB.146971.6 chr13 + 2572 8 novel_in_catalog LAMP1 2701 9 -33 -3 combination_of_known_splicesites FALSE 354 40 0 TRUE -18 451 Normal 194
PB.147007.2 chr13 + 2538 12 novel_not_in_catalog TFDP1 804 7 -48 -11 at_least_one_novel_splicesite FALSE 339 30 -3 TRUE -13 427 Normal 191
PB.28504.185 chr2 - 1786 11 novel_not_in_catalog PRPF40A 1622 14 -24 -2 intron_retention FALSE 302 75 -19 TRUE NA 405 Normal 190
PB.53193.36 chr4 + 3550 19 novel_in_catalog TBC1D1 2977 17 48 -4 combination_of_known_junctions FALSE 294 5 -34 TRUE -20 380 Normal 190
PB.79349.308 chr6 - 2380 10 novel_in_catalog SYNCRIP 2552 11 12 0 combination_of_known_splicesites FALSE 316 35 -9 TRUE NA 394 Normal 190
PB.105607.20 chr9 - 665 2 novel_not_in_catalog DMAC1 2456 2 -44 -3 at_least_one_novel_splicesite FALSE 298 25 -1 TRUE NA 354 Normal 189
PB.80924.7 chr6 - 2617 13 novel_in_catalog FYN 3628 14 -4 -8 intron_retention FALSE 342 60 -5 TRUE NA 439 Normal 189
PB.1427.1 chr1 - 3933 29 novel_in_catalog ATP13A2 3996 29 0 0 combination_of_known_junctions FALSE 380 5 0 TRUE NA 481 Normal 186
PB.194819.3 chrX + 2162 17 novel_in_catalog CDK16 3158 16 -8 -1 combination_of_known_junctions FALSE 329 5 0 TRUE NA 421 Normal 184
PB.28320.2 chr2 - 2679 6 novel_in_catalog RND3 2777 5 0 -5 combination_of_known_junctions FALSE 522 20 -2 TRUE NA 646 Normal 184
PB.6368.13 chr1 + 1451 13 novel_in_catalog SRSF11 3784 13 0 -3 combination_of_known_junctions FALSE 290 40 11 TRUE -36 405 Normal 182
PB.11008.630 chr1 - 2631 11 novel_not_in_catalog YY1AP1 2723 11 -8 -1 at_least_one_novel_splicesite FALSE 291 15 -11 TRUE NA 372 Normal 181
PB.119560.27 chr10 + 1428 10 novel_not_in_catalog TSPAN14 16221 11 19 -1 at_least_one_novel_splicesite FALSE 294 45 2 TRUE -24 356 Normal 177
PB.172952.1 chr17 - 1951 5 novel_in_catalog CYBC1 1965 6 0 0 combination_of_known_splicesites FALSE 286 15 -12 TRUE NA 355 Normal 177
PB.181702.6 chr19 + 1083 2 novel_not_in_catalog ZNF580 1019 2 -10 0 at_least_one_novel_splicesite FALSE 292 10 -15 TRUE -14 371 Normal 177
PB.160780.27 chr16 + 1118 4 novel_not_in_catalog FAM234A 374 3 0 -6 at_least_one_novel_splicesite FALSE 300 30 -16 TRUE -17 374 Normal 176
PB.177909.7 chr19 - 2373 13 novel_not_in_catalog GTF2F1 2432 13 -2 8 at_least_one_novel_splicesite FALSE 285 10 -15 TRUE NA 357 Normal 176
PB.11313.271 chr1 - 561 4 novel_not_in_catalog TSTD1 567 4 -23 -3 at_least_one_novel_splicesite FALSE 299 45 -45 TRUE NA 411 Normal 175
PB.26475.216 chr2 - 2725 9 novel_in_catalog PAX8 4036 12 0 1 combination_of_known_junctions FALSE 389 75 -2 TRUE NA 494 Normal 175
PB.126637.26 chr11 - 2020 10 novel_in_catalog ACP2 2111 11 0 -1 combination_of_known_splicesites FALSE 301 5 -7 TRUE NA 392 Normal 174
PB.166957.41 chr17 + 965 7 novel_in_catalog RNASEK-C17orf49 1662 8 -9 -1 combination_of_known_splicesites FALSE 265 10 -11 TRUE -13 337 Normal 174
PB.75851.22 chr6 - 3728 25 novel_in_catalog BAG6 3843 26 -5 -13 combination_of_known_junctions FALSE 248 10 3 TRUE NA 313 Normal 173
PB.153802.163 chr14 + 715 3 novel_not_in_catalog MTA1 700 2 -29 -44 at_least_one_novel_splicesite FALSE 253 85 12 TRUE NA 317 Normal 172
PB.91633.362 chr7 + 1873 5 novel_in_catalog MEPCE 2261 5 0 0 combination_of_known_splicesites FALSE 286 15 -2 TRUE -26 365 Normal 172
PB.103448.1 chr8 - 3787 28 novel_in_catalog WASHC5 4139 29 26 0 combination_of_known_junctions FALSE 276 25 9 TRUE NA 332 Normal 170
PB.171431.78 chr17 - 3774 11 novel_in_catalog DDX5 3684 13 0 -6 intron_retention FALSE 342 40 -2 TRUE NA 430 Normal 170
PB.163831.1 chr16 - 1696 4 novel_in_catalog IRX3 2625 4 -31 -2 combination_of_known_junctions FALSE 447 10 -8 TRUE NA 554 Normal 168
PB.127889.12 chr11 + 2355 20 novel_in_catalog NADSYN1 2679 21 -8 -6 combination_of_known_splicesites FALSE 285 50 -32 TRUE -11 349 Normal 167
PB.179692.21 chr19 - 942 11 novel_in_catalog DMKN 877 12 -30 0 combination_of_known_junctions FALSE 297 30 6 TRUE NA 392 Normal 167
PB.85378.14 chr6 - 786 5 novel_in_catalog PSMB1 891 6 0 3 combination_of_known_splicesites FALSE 255 20 -27 TRUE NA 331 Normal 167
PB.118802.3 chr10 + 1548 10 novel_not_in_catalog VDAC2 1424 10 3 1 at_least_one_novel_splicesite FALSE 277 35 -11 TRUE -12 329 Normal 166
PB.153292.21 chr14 + 2585 11 novel_not_in_catalog CCNK 3524 11 0 -5 at_least_one_novel_splicesite FALSE 243 20 -5 TRUE -11 303 Normal 166
PB.57174.1 chr4 + 1072 7 novel_in_catalog AIMP1 2880 6 0 3 combination_of_known_junctions FALSE 291 60 0 TRUE -15 394 Normal 165
PB.164315.154 chr16 + 2951 7 novel_in_catalog CBFB 584 6 -8 -6 combination_of_known_junctions FALSE 225 30 4 TRUE -12 274 Normal 162
PB.181174.540 chr19 + 854 7 novel_not_in_catalog SCAF1 4222 11 0 -3 at_least_one_novel_splicesite FALSE 280 15 -6 TRUE -15 337 Normal 162
PB.192.15 chr1 - 696 4 novel_not_in_catalog FAAP20 727 4 1 -3 at_least_one_novel_splicesite FALSE 282 15 -8 TRUE NA 349 Normal 162
PB.69193.22 chr5 + 2711 14 novel_in_catalog GRAMD2B 994 9 0 -17 intron_retention FALSE 316 35 -4 TRUE -11 383 Normal 161
PB.128244.7 chr11 + 1226 5 novel_not_in_catalog PPME1 488 5 -10 -2 at_least_one_novel_splicesite FALSE 281 5 5 TRUE -14 354 Normal 160
PB.130123.8 chr11 + 1503 7 novel_in_catalog BIRC2 3764 9 0 -2 combination_of_known_junctions FALSE 240 40 -41 TRUE -6 294 Normal 159
PB.164028.15 chr16 - 1579 9 novel_not_in_catalog CIAPIN1 2021 9 -1 11 at_least_one_novel_splicesite FALSE 263 25 7 TRUE NA 336 Normal 159
PB.135788.13 chr12 + 1267 11 novel_not_in_catalog TMBIM6 2837 10 0 0 at_least_one_novel_splicesite FALSE 251 15 0 TRUE -19 316 Normal 158
PB.141234.28 chr12 + 1036 6 novel_in_catalog ARL6IP4 1591 6 -5 1 combination_of_known_junctions FALSE 243 5 -24 TRUE -15 324 Normal 158
PB.197183.2 chrX - 2829 6 novel_not_in_catalog ARMCX2 821 6 1 -4 at_least_one_novel_splicesite FALSE 411 30 0 TRUE NA 519 Normal 158
PB.131236.520 chr11 - 668 7 novel_not_in_catalog FXYD2 589 6 0 33 at_least_one_novel_splicesite FALSE 384 30 -2 TRUE -7 510 Normal 157
PB.177413.64 chr19 + 1588 7 novel_in_catalog GPX4 851 7 -7 1 combination_of_known_junctions FALSE 252 10 -4 TRUE -14 324 Normal 157
PB.118247.410 chr10 + 2662 16 novel_in_catalog DDX50 2501 15 -20 0 combination_of_known_junctions FALSE 221 25 -31 TRUE -28 269 Normal 156
PB.164431.7 chr16 + 2678 16 novel_not_in_catalog EDC4 4767 29 39 -3 intron_retention FALSE 227 40 3 TRUE -10 294 Normal 156
PB.24950.5 chr2 + 3791 24 novel_not_in_catalog PROM2 3824 24 -9 -1 at_least_one_novel_splicesite FALSE 484 50 -8 TRUE -22 601 Normal 156
PB.37249.50 chr3 - 1186 6 novel_in_catalog VGLL4 3725 6 -13 -15 combination_of_known_junctions FALSE 229 70 -9 TRUE NA 311 Normal 155
PB.126231.7 chr11 - 1181 5 novel_in_catalog COMMD9 2949 6 -1 -1 intron_retention FALSE 234 15 -8 TRUE NA 304 Normal 154
PB.136427.2 chr12 + 1483 2 novel_not_in_catalog PIP4K2C 548 5 -1 4 at_least_one_novel_splicesite FALSE 282 25 -39 TRUE -19 355 Normal 154
PB.17438.135 chr1 - 1414 11 novel_not_in_catalog RBM34 1847 11 -4 -1 at_least_one_novel_splicesite FALSE 253 25 -31 TRUE NA 312 Normal 154
PB.184822.3 chr20 + 2987 19 novel_in_catalog ACSS2 2925 19 -25 -2 combination_of_known_junctions FALSE 255 25 -4 TRUE -13 318 Normal 152
PB.127761.47 chr11 + 1503 8 novel_not_in_catalog CTTN 2247 19 0 -1 intron_retention FALSE 238 10 -14 TRUE -14 304 Normal 151
PB.151490.11 chr14 + 2426 14 novel_in_catalog DCAF4 2374 14 5 0 intron_retention FALSE 235 30 -19 TRUE -12 299 Normal 151
PB.179662.2 chr19 + 2682 18 novel_not_in_catalog GRAMD1A 2523 18 -42 -2 at_least_one_novel_splicesite FALSE 226 0 -24 TRUE -11 283 Normal 151
PB.25704.22 chr2 - 1557 6 novel_in_catalog FHL2 1876 8 -18 0 combination_of_known_junctions FALSE 240 30 -4 TRUE NA 293 Normal 151
PB.145129.23 chr13 - 3334 4 novel_in_catalog FBXL3 3506 5 0 0 combination_of_known_splicesites FALSE 231 25 1 TRUE NA 277 Normal 150
PB.182016.1 chr19 - 3014 8 novel_not_in_catalog MZF1 2587 6 14 28 at_least_one_novel_splicesite FALSE 235 10 6 TRUE NA 304 Normal 150
PB.188184.39 chr21 + 2803 24 novel_in_catalog TTC3 3626 32 3 0 combination_of_known_junctions FALSE 244 80 -14 TRUE NA 315 Normal 150
PB.126657.163 chr11 - 3626 14 novel_not_in_catalog CELF1 8132 15 -1 -2 intron_retention FALSE 230 85 1 TRUE NA 295 Normal 148
PB.1700.13 chr1 - 3255 12 novel_in_catalog HP1BP3 3884 13 -15 -6 intron_retention FALSE 212 75 -29 TRUE NA 276 Normal 148
PB.20385.105 chr2 + 510 3 novel_not_in_catalog MRPL33 508 4 0 16 at_least_one_novel_splicesite FALSE 213 15 -19 TRUE -31 238 Normal 148
PB.11059.5 chr1 + 1343 2 novel_not_in_catalog SLC25A44 3467 4 8 -1 at_least_one_novel_splicesite FALSE 245 10 2 TRUE -19 329 Normal 147
PB.171710.453 chr17 + 1779 11 novel_in_catalog KPNA2 1973 11 0 0 combination_of_known_junctions FALSE 263 10 -1 TRUE -13 339 Normal 147
PB.184850.212 chr20 - 1765 10 novel_in_catalog EDEM2 1884 11 -6 -3 combination_of_known_splicesites FALSE 228 20 -23 TRUE NA 273 Normal 147
PB.185899.242 chr20 - 2132 6 novel_not_in_catalog PEDS1 7703 6 -31 3 at_least_one_novel_splicesite FALSE 239 30 10 TRUE NA 311 Normal 147
PB.109610.9 chr9 - 2882 16 novel_not_in_catalog HNRNPK 2652 16 -7 -2 at_least_one_novel_splicesite FALSE 215 15 -12 TRUE NA 253 Normal 146
PB.151066.21 chr14 - 2726 9 novel_in_catalog DCAF5 5946 9 -11 8 combination_of_known_junctions FALSE 221 70 -12 TRUE NA 279 Normal 146
PB.54124.117 chr4 + 2984 8 novel_in_catalog PAICS 6371 9 -9 -20 combination_of_known_splicesites FALSE 218 55 -4 TRUE NA 278 Normal 146
PB.118627.5 chr10 - 2732 15 novel_in_catalog P4HA1 2790 14 4 0 combination_of_known_junctions FALSE 223 35 2 TRUE NA 270 Normal 145
PB.162739.58 chr16 + 1158 11 novel_in_catalog LCMT1 1352 11 -26 -1 combination_of_known_junctions FALSE 218 10 -4 TRUE -13 276 Normal 145
PB.2431.433 chr1 + 2397 12 novel_in_catalog RCC1 2551 13 0 -1 combination_of_known_splicesites FALSE 223 30 -4 TRUE -13 269 Normal 145
PB.169659.1 chr17 + 2040 4 novel_in_catalog TMUB2 1580 6 0 0 intron_retention FALSE 205 20 -12 TRUE -21 255 Normal 144
PB.48305.61 chr3 + 2406 10 novel_not_in_catalog ECT2 4136 25 0 -6 at_least_one_novel_splicesite FALSE 253 25 9 TRUE -13 298 Normal 144
PB.172178.706 chr17 + 3553 26 novel_in_catalog LLGL2 3553 26 -5 0 combination_of_known_junctions FALSE 239 25 -25 TRUE -16 304 Normal 143
PB.20171.12 chr2 + 1255 7 novel_not_in_catalog SLC35F6 3902 6 0 -3 at_least_one_novel_splicesite FALSE 247 30 -9 TRUE -15 295 Normal 143
PB.98098.28 chr8 + 2186 7 novel_not_in_catalog RBPMS 2974 10 0 -1 at_least_one_novel_splicesite FALSE 216 35 0 TRUE -19 274 Normal 143
PB.121713.177 chr10 + 1279 5 novel_not_in_catalog ADD3 683 5 42 -1 at_least_one_novel_splicesite FALSE 209 25 -3 TRUE -16 246 Normal 142
PB.163079.2 chr16 + 1428 9 novel_in_catalog PPP4C 1402 9 -3 1 combination_of_known_junctions FALSE 216 10 -29 TRUE -16 283 Normal 141
PB.178102.101 chr19 + 2472 15 novel_not_in_catalog HNRNPM 2458 15 -1 0 intron_retention FALSE 202 20 -6 TRUE -13 238 Normal 141
PB.118489.20 chr10 + 761 3 novel_in_catalog ANAPC16 3231 4 6 -33 combination_of_known_splicesites FALSE 197 50 6 TRUE -42 257 Normal 140
PB.83822.9 chr6 + 1548 3 novel_in_catalog AKAP12 6597 4 7 0 combination_of_known_splicesites FALSE 547 20 1 TRUE -16 675 Normal 140
PB.131236.535 chr11 - 673 7 novel_not_in_catalog FXYD2 589 6 0 28 at_least_one_novel_splicesite FALSE 263 45 -2 TRUE -7 351 Normal 139
PB.168738.66 chr17 - 4102 8 novel_not_in_catalog RFFL 2030 8 -24 -7 at_least_one_novel_splicesite FALSE 221 15 32 TRUE -43 277 Normal 138
PB.37464.2 chr3 - 1441 3 novel_in_catalog CHCHD4 1603 4 -9 -1 combination_of_known_junctions FALSE 200 15 -30 TRUE NA 247 Normal 138
PB.63307.7 chr5 + 2449 6 novel_in_catalog ZNF131 2400 8 5 0 intron_retention FALSE 172 20 -14 TRUE -14 224 Normal 138
PB.118489.28 chr10 + 1049 3 novel_in_catalog ANAPC16 3231 4 -10 -4 combination_of_known_splicesites FALSE 190 25 -39 TRUE -17 243 Normal 137
PB.186656.24 chr20 + 972 3 novel_in_catalog PPDPF 827 4 0 -3 intron_retention FALSE 191 30 -5 TRUE NA 248 Normal 136
PB.49419.7 chr3 + 2815 17 novel_in_catalog EIF4G1 5405 33 -3 9 combination_of_known_junctions FALSE 212 50 -30 TRUE NA 257 Normal 136
PB.56626.8 chr4 + 2452 14 novel_in_catalog RAP1GDS1 3747 15 -10 -5 combination_of_known_splicesites FALSE 207 10 -26 TRUE -19 301 Normal 136
PB.118748.325 chr10 + 1130 5 novel_not_in_catalog VCL 6489 21 18 -6 at_least_one_novel_splicesite FALSE 211 50 11 TRUE -13 269 Normal 135
PB.138881.17 chr12 + 2414 13 novel_in_catalog VEZT 3002 13 0 -8 combination_of_known_junctions FALSE 182 70 -14 TRUE NA 225 Normal 135
PB.191257.319 chr22 + 1033 3 novel_not_in_catalog SREBF2 5237 19 10 -1 at_least_one_novel_splicesite FALSE 180 20 -5 TRUE -19 230 Normal 135
PB.53805.10 chr4 - 568 5 novel_in_catalog OCIAD2 812 6 12 1 combination_of_known_junctions FALSE 218 35 -4 TRUE NA 285 Normal 135
PB.121886.10 chr10 - 2319 11 novel_in_catalog ZDHHC6 2145 11 0 0 combination_of_known_junctions FALSE 189 35 -4 TRUE NA 246 Normal 134
PB.145814.39 chr13 + 4701 9 novel_in_catalog MBNL2 2574 11 0 -7 intron_retention FALSE 197 35 0 TRUE -10 234 Normal 133
PB.185509.5 chr20 + 1200 4 novel_in_catalog PKIG 1443 6 -12 -3 combination_of_known_junctions FALSE 170 25 -1 TRUE -16 229 Normal 133
PB.18824.1 chr2 - 1036 7 novel_not_in_catalog ITGB1BP1 4153 7 -2 23 at_least_one_novel_splicesite FALSE 186 35 -14 TRUE NA 214 Normal 133
PB.22722.3 chr2 - 2651 17 novel_not_in_catalog MTIF2 2536 16 1 0 at_least_one_novel_splicesite FALSE 168 15 1 TRUE NA 217 Normal 133
PB.34751.2 chr2 - 2050 8 novel_in_catalog SERPINE2 2226 9 0 19 combination_of_known_splicesites FALSE 378 65 -1 TRUE -24 473 Normal 133
PB.131236.522 chr11 - 684 6 novel_not_in_catalog FXYD2 589 6 0 28 at_least_one_novel_splicesite FALSE 259 45 -2 TRUE -7 373 Normal 131
PB.157532.12 chr15 + 2676 17 novel_not_in_catalog USP3 2439 16 10 -5 at_least_one_novel_splicesite FALSE 204 25 -2 TRUE -35 263 Normal 131
PB.160772.11 chr16 - 2431 11 novel_in_catalog NPRL3 3128 14 -1 -5 combination_of_known_splicesites FALSE 186 30 -19 TRUE NA 241 Normal 131
PB.168290.2 chr17 + 1524 8 novel_not_in_catalog TP53I13 1050 6 -12 -4 at_least_one_novel_splicesite FALSE 214 20 -5 TRUE -10 268 Normal 131
PB.141439.417 chr12 - 2669 13 novel_not_in_catalog SCARB1 3405 13 3 -7 at_least_one_novel_splicesite FALSE 204 40 0 TRUE NA 247 Normal 130
PB.147377.2 chr14 - 1016 4 novel_in_catalog SDR39U1 976 5 -18 -1 combination_of_known_junctions FALSE 195 15 -7 TRUE NA 254 Normal 130
PB.184744.34 chr20 - 1771 11 novel_not_in_catalog AHCY 2150 10 1 0 at_least_one_novel_splicesite FALSE 196 30 -1 TRUE -22 249 Normal 130
PB.169347.37 chr17 + 1377 3 novel_in_catalog EIF1 815 4 0 0 intron_retention FALSE 200 15 -2 TRUE -14 254 Normal 129
PB.84494.12 chr6 + 1031 4 novel_in_catalog MRPL18 758 4 14 -1 combination_of_known_splicesites FALSE 191 25 9 TRUE -19 237 Normal 129
PB.50688.27 chr4 + 2891 7 novel_not_in_catalog RNF4 2921 8 -6 -4 at_least_one_novel_splicesite FALSE 156 45 4 TRUE -13 201 Normal 128
PB.113408.4 chr9 + 3234 16 novel_not_in_catalog GLE1 3302 16 6 5 at_least_one_novel_splicesite FALSE 173 25 -13 TRUE -24 216 Normal 126
PB.120913.5 chr10 + 3023 12 novel_in_catalog ZFYVE27 3045 13 0 -2 combination_of_known_junctions FALSE 192 5 -34 TRUE -14 232 Normal 126
PB.141156.14 chr12 - 1608 7 novel_in_catalog DIABLO 1418 7 0 2 intron_retention FALSE 178 40 -18 TRUE NA 231 Normal 126
PB.89800.109 chr7 + 1078 3 novel_not_in_catalog ENSG00000226824 447 2 2 -1 at_least_one_novel_splicesite FALSE 169 10 3 TRUE -17 207 Normal 126
PB.139753.39 chr12 - 3008 20 novel_in_catalog APPL2 3171 21 27 2 combination_of_known_splicesites FALSE 181 20 -15 TRUE NA 218 Normal 125
PB.24771.1 chr2 - 1805 4 novel_not_in_catalog KRCC1 1807 4 18 -1 at_least_one_novel_splicesite FALSE 176 15 8 TRUE NA 236 Normal 124
PB.181620.1 chr19 + 2624 17 novel_in_catalog EPS8L1 2360 18 -47 0 intron_retention FALSE 309 25 0 TRUE -15 390 Normal 123
PB.171902.6 chr17 + 2103 5 novel_in_catalog KCNJ16 4062 5 0 -7 combination_of_known_junctions FALSE 214 15 -2 TRUE -18 259 Normal 122
PB.172065.1 chr17 - 2859 10 novel_in_catalog SLC39A11 2752 10 0 2 combination_of_known_junctions FALSE 208 20 5 TRUE NA 265 Normal 122
PB.51185.3 chr4 + 1232 7 novel_not_in_catalog SH3TC1 4293 18 -16 6 at_least_one_novel_splicesite FALSE 186 40 -21 TRUE -21 220 Normal 122
PB.49428.11 chr3 + 1458 6 novel_in_catalog POLR2H 1807 6 -4 2 combination_of_known_splicesites FALSE 192 15 -32 TRUE -18 236 Normal 120
PB.49591.6 chr3 + 1994 12 novel_in_catalog EIF4A2 1977 12 0 -3 combination_of_known_junctions FALSE 167 20 -2 TRUE -13 203 Normal 120
PB.91828.15 chr7 + 1267 5 novel_in_catalog ARMC10 2445 6 0 -5 combination_of_known_junctions FALSE 166 15 -20 TRUE -26 217 Normal 120
PB.4786.4 chr1 - 2123 16 novel_not_in_catalog CC2D1B 5338 25 0 -1 at_least_one_novel_splicesite FALSE 168 30 11 TRUE NA 216 Normal 119
PB.121157.2 chr10 + 2131 4 novel_not_in_catalog LZTS2 2883 5 -6 -39 at_least_one_novel_splicesite FALSE 181 85 -1 TRUE NA 248 Normal 118
PB.167178.125 chr17 + 2241 9 novel_in_catalog NDEL1 2352 9 -2 0 combination_of_known_junctions FALSE 194 45 1 TRUE -9 246 Normal 118
PB.28504.81 chr2 - 2585 24 novel_not_in_catalog PRPF40A 8048 26 22 -41 at_least_one_novel_splicesite FALSE 170 65 0 TRUE -5 221 Normal 118
PB.39946.101 chr3 + 966 4 novel_not_in_catalog DAG1 579 3 0 -2 at_least_one_novel_splicesite FALSE 158 20 -5 TRUE -18 176 Normal 118
PB.53991.11 chr4 + 2054 16 novel_in_catalog FIP1L1 3396 18 -25 -9 combination_of_known_junctions FALSE 154 35 2 TRUE -18 193 Normal 117
PB.59869.33 chr4 - 1725 15 novel_not_in_catalog PLRG1 3317 15 -21 -3 at_least_one_novel_splicesite FALSE 161 30 -13 TRUE NA 209 Normal 117