just_LR_preds_no_Illumina: clean
	./analyze_cancer_data.pl  --min_read_support 3 # run with different values to explore different truth sets accordingly.



illum_TP_uniq_FP: clean
	./analyze_cancer_data.pl  --min_read_support 1
	./analyze_Illum_as_TP_unique_as_FP.pl either
	./analyze_Illum_as_TP_unique_as_FP.pl arriba,starF
	./analyze_Illum_as_TP_unique_as_FP.pl arriba
	./analyze_Illum_as_TP_unique_as_FP.pl starF


clean:
	./cleanMe.sh

