sp2ind_dict = {
"DUM":["D_family1_41_female","D_pseudo_12_female","D_pseudo_karaotawi"],
"TENT":["T_family1_81_female"],
"MIM":["M_pseudo_antanawee","M_family1_1_female"],
"LIN":["LIN_family1_F_female"],
"BI":["BI","BI_psmc"],
"SARA":["SARA_pseudo_f1f2","SARA_HymSri"],
"PAC":["PAC_127","PAC_130"]}

sp2chrom_dict = {
"DUM":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8","HiC_scaffold_9",
"HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12","HiC_scaffold_13",
"HiC_scaffold_14","HiC_scaffold_15"],
"TENT":["HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8","HiC_scaffold_9",
"HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12","HiC_scaffold_13",
"HiC_scaffold_15","HiC_scaffold_16"],
"MIM":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8","HiC_scaffold_9",
"HiC_scaffold_10","HiC_scaffold_12","HiC_scaffold_13","HiC_scaffold_14",
"HiC_scaffold_15","HiC_scaffold_16","HiC_scaffold_17"],
"LIN":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_15","HiC_scaffold_16",
"HiC_scaffold_17","HiC_scaffold_18","HiC_scaffold_19","HiC_scaffold_20",
"HiC_scaffold_21","HiC_scaffold_22","HiC_scaffold_23"],
"BI":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_15","HiC_scaffold_16",
"HiC_scaffold_17"],
"SARA":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_15","HiC_scaffold_16"],
"PAC":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_15","HiC_scaffold_16"]
}
sp2Achrom_dict = {
"DUM":["HiC_scaffold_1","HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_7","HiC_scaffold_8","HiC_scaffold_9","HiC_scaffold_11","HiC_scaffold_12","HiC_scaffold_13",
"HiC_scaffold_14","HiC_scaffold_15"],
"TENT":["HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12","HiC_scaffold_13",
"HiC_scaffold_15","HiC_scaffold_16"],
"MIM":["HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8","HiC_scaffold_9",
"HiC_scaffold_10","HiC_scaffold_12","HiC_scaffold_13","HiC_scaffold_14",
"HiC_scaffold_15","HiC_scaffold_16","HiC_scaffold_17"],
"LIN":["HiC_scaffold_1","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_6","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_16",
"HiC_scaffold_17","HiC_scaffold_18","HiC_scaffold_19","HiC_scaffold_20",
"HiC_scaffold_21","HiC_scaffold_22","HiC_scaffold_23"],
"BI":["HiC_scaffold_1","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_15","HiC_scaffold_16",
"HiC_scaffold_17"],
"SARA":["HiC_scaffold_1","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_15","HiC_scaffold_16"],
"PAC":["HiC_scaffold_1","HiC_scaffold_3","HiC_scaffold_4",
"HiC_scaffold_5","HiC_scaffold_7","HiC_scaffold_8",
"HiC_scaffold_9","HiC_scaffold_10","HiC_scaffold_11","HiC_scaffold_12",
"HiC_scaffold_13","HiC_scaffold_14","HiC_scaffold_15","HiC_scaffold_16"]
}
sp2Xchrom_dict = {
"DUM":["HiC_scaffold_5","HiC_scaffold_10"],
"TENT":["HiC_scaffold_6","HiC_scaffold_9"],
"MIM":["HiC_scaffold_1","HiC_scaffold_6"],
"LIN":["HiC_scaffold_2","HiC_scaffold_3","HiC_scaffold_15"],
"BI":["HiC_scaffold_2","HiC_scaffold_6"],
"SARA":["HiC_scaffold_2","HiC_scaffold_6"],
"PAC":["HiC_scaffold_2","HiC_scaffold_6"],
}
sp2ref_dict = {
"DUM":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/DUM/DUM_hifi_hic_scaffolded_trim.fa",
"TENT":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/TENT/TENT_hifi_hic_scaffolded_trim.fa",
"MIM":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/MIM/MIM_hifi_hic_scaffolded_trim.fa",
"LIN":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/LIN/LIN_hifi_hic_scaffolded_trim.fa",
"BI":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/BI/BI_hifi_hic_scaffolded_trim.fa",
"SARA":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/SARA/SARA_hifi_hic_scaffolded_trim.fa",
"PAC":"/home/jilong/spider2/faststorage/social_spiders_2020/people/jilong/steps/3D_dna/final_3d/PAC/pacificus_consensus.fasta"}
