Usage: mixcr sortClones [--by-feature <gene_feature>]... [--by-gene <gene_type>]...
                        [--use-local-temp] [--force-overwrite] [--no-warnings] [--verbose] [--help]
                        clones.(clns|clna) clones.sorted.(clns|clna)
Sort clones by sequence. Clones in the output file will be sorted by clonal sequence, which allows
to build overlaps between clonesets.
      clones.(clns|clna)
      clones.sorted.(clns|clna)

      --by-feature <gene_feature>
                           Sort by specified features. By default `assemblingFeatures` will be used
      --by-gene <gene_type>
                           Sort by specified genes. This sorting will be applied after sorting by
                             `--feature`. By default `V` and 'J' will be used
      --use-local-temp     Put temporary files in the same folder as the output files.
  -f, --force-overwrite    Force overwrite of output file(s).
      -nw, --no-warnings   Suppress all warning messages.
      --verbose            Verbose messages.
  -h, --help               Show this help message and exit.
