Usage: mixcr overlapScatterPlot --downsampling (<type>|none) [--chains <chain>[,<chain>...]]...
                                [--only-productive] [--criteria <s>] [--method <method>] [--no-log]
                                [--force-overwrite] [--no-warnings] [--verbose] [--help] cloneset_1.
                                (clns|clna) cloneset_2.(clns|clna) output.(pdf|eps|svg|png|jpeg)
Plot overlap scatter-plot.
      cloneset_1.(clns|clna)

      cloneset_2.(clns|clna)

      output.(pdf|eps|svg|png|jpeg)

      --downsampling (<type>|none)
                           Choose downsampling applied to normalize the clonesets. Possible values:
                           count-[reads|TAG|molecule]-[auto|min|fixed-<number>]
                            top-[reads|TAG|molecule]-[<number>]
                            cumtop-[reads|TAG|molecule]-[percent]
      --chains <chain>[,<chain>...]
                           Chains to export.
      --only-productive    Filter out-of-frame sequences and sequences with stop-codons.
      --criteria <s>       Overlap criteria. Defines the rules to treat clones as equal. It allows
                             to specify gene feature for overlap (nucleotide or amino acid), and
                             optionally use V and J hits.
                           Examples: `CDR3|AA|V|J` (overlap by a.a. CDR3 and V and J),
                             `VDJRegion|AA` (overlap by a.a. `VDJRegion`), `CDR3|NT|V` (overlap by
                             nt CDR3 and V).
                             Default: CDR3|AA|V|J
      --method <method>    Correlation method to use. Possible value: Pearson, Kendall, Spearman.
                             Default: Pearson
      --no-log             Do not apply log10 to clonotype frequencies.
  -f, --force-overwrite    Force overwrite of output file(s).
      -nw, --no-warnings   Suppress all warning messages.
      --verbose            Verbose messages.
  -h, --help               Show this help message and exit.
