Usage: mixcr exportShmTreesNewick [--filter-min-nodes <n>] [--filter-min-height <n>] [--ids <id>[,
                                  <id>...]]... [--chains <chains>] [--force-overwrite]
                                  [--no-warnings] [--verbose] [--help] [[--filter-in-feature
                                  <gene_feature>] [--pattern-max-errors <n>] (--filter-aa-pattern
                                  <pattern> | --filter-nt-pattern <pattern>)] trees.shmt outputDir
Export SHMTree as newick
      trees.shmt             Input file produced by 'findShmTrees' command.
      outputDir              Output directory to write newick files. Separate file for every tree
                               will be created
      --filter-min-nodes <n> Minimal number of nodes in tree
      --filter-min-height <n>
                             Minimal height of the tree
      --ids <id>[,<id>...]   Filter specific trees by id
      --chains <chains>      Export only trees that contains clones with specific chain (e.g. IGK,
                               IGL or IGH).
  -f, --force-overwrite      Force overwrite of output file(s).
      -nw, --no-warnings     Suppress all warning messages.
      --verbose              Verbose messages.
  -h, --help                 Show this help message and exit.
Filter by pattern
      --filter-in-feature <gene_feature>
                             Match pattern inside specified gene feature.
                               Default: CDR3
      --pattern-max-errors <n>
                             Max allowed subs & indels.
                               Default: 0
      --filter-aa-pattern <pattern>
                             Filter specific trees by aa pattern.
      --filter-nt-pattern <pattern>
                             Filter specific trees by nt pattern.
